PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015607
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 391aa    MW: 43031.7 Da    PI: 7.0212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015607genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08291331954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Cla015607 291 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 331
                69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14287347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-12290345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5291331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.15E-5304336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDHLNWNGYG SRVATKTTTS ASFWSNYQQG VEERFMISNS NNSNFFNSLQ DFPIKEAATS  60
SALVSKTGEA LVISPPLTSF TTSSNMDVVG LESQLLTGFN GDKSATVTTC SLESLDCLLS  120
ATNSNTDTSV EDDGSVSMML TDYTNLWNFG RNAAASSRES EKNGSNSTKR SHDQTHFKAA  180
DYSIFSNNII NLSDSTSDSG GFRIITDQNP PKQKKPRSEK PPSSSNINFQ QSCSSGSSCI  240
DQEPDPEAIA QMKEMIYRAA AFRPVNLGLE MIEKPKRKNV RISTDPQTVA ARQRRERISE  300
RIRVLQRLVP GGSKMDTASM LDEAANYLKF LKSQIKALEN LGQKLESLNC PPTSIAFSFN  360
PSFPIQTSSS SSHNNFTLQN PNHLISQYPQ N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462383.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D29e-81BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1S3CGV30.0A0A1S3CGV3_CUCME; transcription factor bHLH87
STRINGXP_008462383.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]