PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015578

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 287aa MW: 31941.7 Da PI: 5.0489

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015578	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.4	6.7e-40	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+e+am+++++++++r dPv G++++i++lq+q+e +kael+ + ++ Cla015578 31 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQ 130 7*********************************************************************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.34	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-37	31	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSPINHHQHF SKSTSAAVTT TTSSTTTTTQ ACAACKYQRR KCAPDCILAP YFPHDRQRQF 60 LNAHKLFGVS NITKIIKNLD PFEKEEAMRT IIFQSDVRSV DPVGGCYRII RDLQRQIEYS 120 KAELEIVLHQ LAICKQQAAA AAAAAAAAAA ILEADPMSGY GGIEHQFVEG YEGEGFVVGE 180 NENGESLEDQ DVEVWGIQDS CSSLQLKQAG SVHDFHDIKI DTNNNHLQQQ LKFQHDRHPD 240 LVHQSEEPML KMDNVILKED SDPIQQAQDQ ELKGAVDTLF TFPACDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-27	24	125	4	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-27	24	125	4	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022991793.1	1e-156	LOB domain-containing protein 29-like
TrEMBL	A0A0A0K9M3	1e-164	A0A0A0K9M3_CUCSA; Uncharacterized protein
STRING	XP_008462351.1	1e-163	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-51	LOB domain-containing protein 22