PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015554
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 644aa    MW: 71448.4 Da    PI: 5.8864
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015554genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08527575348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g+W+ I +        Rt  ++k++w+++l
        Cla015554 527 AWTLVEVIKLVEGVSKCGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 575
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.351520579IPR017930Myb domain
SuperFamilySSF466893.18E-15522582IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-12522583IPR009057Homeodomain-like
SMARTSM007171.4E-8524577IPR001005SANT/Myb domain
CDDcd116601.99E-19526576No hitNo description
PfamPF002496.6E-6527575IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
METVVGFVEN EGKIIESRAA EDGSTLSPNQ IADPVVYKLV RVKDTIVLIE MSIDEGFGNF  60
AEIVRYMWKK CNAIFSSVDG DGRFVPATDD EVMEVEDLLE DGKNEKVEDA ERIVGCIPTE  120
GTLFGKPHVE ISNDMPGLPQ SETFEAAGEY NARLEYIEDV LQKVKQEERL RLTCGLPNYA  180
SAYVNRDRKS FDEHGRLPVI DEKLQSNLSL QEITHSISPS LNENHVSKHG SLGDCLKHPD  240
NSVEFESSDA LCTTSNPDFS LLKGDVCLDN LSIRELHECF KAAFGRDTTV KDKSWLKRRI  300
AMGLTNSCDI PASSFIIKEG KFVEESSQKV EGMSNVQTTD ALKIECRGSP TTYSLEDKDR  360
HHFEDMELDH GSEGQHDERA AVKRIRKPTR RYIEELSEVE SREYVQKVIS LNKNTISDGV  420
STNSIARPIK KVYSDGGRTV ITRLDSLGGS GFQVPCVSRV RRSRPRKDVV ALVFALPDKD  480
QNPSVAVTDE AEKNLEQKQT VSGNASDDNT SVVPTSKGGV RRKHHRAWTL VEVIKLVEGV  540
SKCGAGRWSE IKKLSFSSYS YRTSVDLKDK WRNLLKASFA QTPVDEGISA RKHASISIPA  600
QILLRVRELA EMHAQIPPSN HGQGKLGGGV TGSMHEMSSS AVCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460466RRSRPRK
2460467RRSRPRKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462318.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X1
RefseqXP_008462319.20.0PREDICTED: uncharacterized protein LOC103500701 isoform X1
TrEMBLA0A1S3CI770.0A0A1S3CI77_CUCME; uncharacterized protein LOC103500701 isoform X1
STRINGXP_004141697.10.0(Cucumis sativus)
STRINGXP_004167883.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-99TRF-like 6