PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015525
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 375aa    MW: 41197.9 Da    PI: 10.2731
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015525genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.1e-1670157186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ r+ +qCk++++ ++k+yk +k+    +  +  s++p++d+l+
  Cla015525  70 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKITAG--GGPSKWPFYDRLD 157
                7*************************************87666677899**********************9997..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2768159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MKEDDEIQSY PSPGSGSPAS PISNGRITVT VAAAPPPPPS SQNMITLALP NQQSKGGGGG  60
GSGGGGREDC WSEGATSVLI DAWGERYLEL SRGNLKQKHW KEVADIVSSR EDYTKIPRTD  120
IQCKNRIDTV KKKYKTEKAK ITAGGGPSKW PFYDRLDQLI GPASKNSASS AGVATAVNPP  180
LQQNQKVPLG IPVVNRSLIP YQAHHNHSHQ QQPKGPKAQK IQYHKRPRTT DSDSSGSDRE  240
TSPTSSDSYR QGNFQRKNVR VQKEVVNPNL GQVGKTEKGR NGSREKGWKN AVSELTQAIL  300
KFGEAYEQAE SSKLQQVVEM EKQRMKFAKD LELQRMQFFM KTQLEISQLK HGRRVVAAGN  360
HHCSNNNNSN SDSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15466KGGGGGGSGGGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462265.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-101ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S3CH310.0A0A1S3CH31_CUCME; trihelix transcription factor ASIL2
STRINGXP_008462265.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.18e-80sequence-specific DNA binding transcription factors