PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015276
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 336aa    MW: 37144.4 Da    PI: 6.3165
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015276genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.9e-17169223256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Cla015276 169 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTK 223
                778899***********************************************98 PP
2HD-ZIP_I/II126.11.6e-40169259192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
    Cla015276 169 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 259
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-17163226IPR009057Homeodomain-like
PROSITE profilePS5007116.552165225IPR001356Homeobox domain
SMARTSM003893.5E-15167229IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-16169223IPR009057Homeodomain-like
CDDcd000861.56E-15169226No hitNo description
PfamPF000469.6E-15169223IPR001356Homeobox domain
PROSITE patternPS000270200223IPR017970Homeobox, conserved site
SMARTSM003405.6E-25225268IPR003106Leucine zipper, homeobox-associated
PfamPF021836.8E-11225259IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELGLSLGDA PKPFRFVEKQ PQVPPPQRVL SRPDLGFCVD LSIGRPFVGE KEDDEEKPNQ  60
REDESDANED PPIQLDLLPH NPVPRNLTNP YQGFPWPSSE NDEGEDRTAS PNSAASSFQM  120
EFGLYGGGGN ISCRRDQIEN GVNGVINKVG EAGRASSRAS DEDENGCTRK KLRLSKEQSA  180
FLEESFKEHN TLNPKQKLAL AKQLNLLPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET  240
LTEENRRLQK ELQELRALKT TNSFYMQLPA TTLTMCPSCE RVTSTSAAST VAAVATSGGK  300
STEGVSKRSG FAIAGRPSSS SFPFSAKTQS HQSTAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173TRKKLRL
2217225RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818049e-93LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132559e-93LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461247.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466653e-89HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3CEP00.0A0A1S3CEP0_CUCME; homeobox-leucine zipper protein HOX11-like
STRINGXP_008461247.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-75homeobox from Arabidopsis thaliana