PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015165
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 277aa    MW: 31978.9 Da    PI: 6.0535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015165genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l ++++ +G g+W+++ar+ g++Rt+k+c++rw++yl
        Cla015165 25 KGPWTAEEDSVLFNYINCHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 72
                     79********************************************97 PP
2Myb_DNA-binding47.63.8e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
        Cla015165  78 RGNITLQEQLLILDLHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.5452076IPR017930Myb domain
SuperFamilySSF466891.54E-3022119IPR009057Homeodomain-like
SMARTSM007174.0E-142474IPR001005SANT/Myb domain
PfamPF002493.9E-152572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-222679IPR009057Homeodomain-like
CDDcd001672.92E-102772No hitNo description
SMARTSM007175.7E-1377125IPR001005SANT/Myb domain
PROSITE profilePS5129416.86377127IPR017930Myb domain
PfamPF002491.2E-1378121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2180126IPR009057Homeodomain-like
CDDcd001675.97E-982121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDVKMRGFRC AEPQRTKEEE MDVRKGPWTA EEDSVLFNYI NCHGEGRWNA VARCTGLKRT  60
GKSCRLRWLN YLRPSVRRGN ITLQEQLLIL DLHFRWGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKQAKQL NCDVNSKQFR DAMRYVWMPR LLERIQASTD STTTTVDVIQ PPHPPLELTQ  180
SSSSRSSWVN PHVAPTTSSS DSISDQVQLQ VSPVSDVIEN FNLVGSSEED RMVMLMEHGC  240
DGETMNGWIG GGELLENGFW NGEDMWSFLE QQFGDDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-242212724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0369011e-180FJ036901.1 Cucumis sativus clone CU20C06 myb-like transcription factor Myb5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461407.11e-180PREDICTED: transcription factor MYB108-like
SwissprotQ2QZJ84e-79JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A1S3CEB91e-179A0A1S3CEB9_CUCME; transcription factor MYB108-like
STRINGXP_008461407.11e-179(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.13e-79myb domain protein 2
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]