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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cla015165 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
MYB |
| Protein Properties |
Length: 277aa MW: 31978.9 Da PI: 6.0535 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla015165 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd l ++++ +G g+W+++ar+ g++Rt+k+c++rw++yl
Cla015165 25 KGPWTAEEDSVLFNYINCHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 72
79********************************************97 PP
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| 2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
Cla015165 78 RGNITLQEQLLILDLHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
7899******************.*********.***********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MDVKMRGFRC AEPQRTKEEE MDVRKGPWTA EEDSVLFNYI NCHGEGRWNA VARCTGLKRT 60
GKSCRLRWLN YLRPSVRRGN ITLQEQLLIL DLHFRWGNRW SKIAQYLPGR TDNEIKNYWR 120
TRVQKQAKQL NCDVNSKQFR DAMRYVWMPR LLERIQASTD STTTTVDVIQ PPHPPLELTQ 180
SSSSRSSWVN PHVAPTTSSS DSISDQVQLQ VSPVSDVIEN FNLVGSSEED RMVMLMEHGC 240
DGETMNGWIG GGELLENGFW NGEDMWSFLE QQFGDDV
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ036901 | 1e-180 | FJ036901.1 Cucumis sativus clone CU20C06 myb-like transcription factor Myb5 mRNA, partial cds. |
| Publications
? help Back to Top |
- Ahn IP,Kim S,Kang S,Suh SC,Lee YH
Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
Phytopathology, 2005. 95(11): p. 1248-55
[PMID:18943354] - Campos-Soriano L,García-Martínez J,San Segundo B
The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
Mol. Plant Pathol., 2012. 13(6): p. 579-92
[PMID:22212404] - Yokotani N, et al.
Role of the rice transcription factor JAmyb in abiotic stress response.
J. Plant Res., 2013. 126(1): p. 131-9
[PMID:22847900] - Wang D, et al.
Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
[PMID:26740780] - Fred AK,Kiswara G,Yi G,Kim KM
Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
[PMID:26869604]
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