PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015002
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 695aa    MW: 77951.5 Da    PI: 6.2856
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015002genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.4e-24125226199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+v+
  Cla015002 125 FCKILTASDTSTHGGFSVLRKHATEClppldMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELRVG 222
                99****************************9555555669************************************************..3489999*** PP

                EE-S CS
         B3  96 vfrk 99 
                v+r+
  Cla015002 223 VRRQ 226
                *996 PP
2Auxin_resp99.25.8e-33251330183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F+++++k+++++k+ + vGmRfkm+fe+e+s+err++Gt+vgv d++p +W nSkWrsLk
   Cla015002 251 ASHAVRTQTYFVVYYKPRT--SQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISP-QWLNSKWRSLK 330
                 689***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-41116254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40118240IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-20123225No hitNo description
PfamPF023623.9E-22125226IPR003340B3 DNA binding domain
SMARTSM010193.6E-23125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407125227IPR003340B3 DNA binding domain
PfamPF065071.1E-30251330IPR010525Auxin response factor
PfamPF023092.0E-10567667IPR033389AUX/IAA domain
SuperFamilySSF542772.62E-11579659No hitNo description
PROSITE profilePS5174524.428583675IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MTLYEENPGE SRKGLEGEDL YEELWKACAG PLVEVPVNGE RVFYFPQGHM EQLEESTNQE  60
LNHQIPHFDL PPKILCRVVN IRLLAEKETD EVYAQITLYP EADQSEPQSP DPEPPERTRQ  120
TVHSFCKILT ASDTSTHGGF SVLRKHATEC LPPLDMSQST PTQELVAKDL HGYEWKFKHI  180
FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRQARQQ SLMPSSVISS  240
HSMHLGVLAT ASHAVRTQTY FVVYYKPRTS QFIISLNKYL ETIKNGYEVG MRFKMRFEGE  300
ESPERRFTGT IVGVGDISPQ WLNSKWRSLK IQWDEPATIQ RPERVSPWEI EPFVPSASLN  360
FTHPAIKSKR ARPVEIPSPE ITSSSAPSGF WLQGSTIPHE IPQLSGTNEV QSSNNRVVWA  420
LGQRKLDSNS NHSNPIANVE GIWPSPPLNI SLKLYPDSTF DSELVQKQAP PSPYSSSVTS  480
KPSSDLIQHD QLEKGNKTDI SLGCRIFGID LKNNSSIVSS LERKSCCPMT VANGAKDPVA  540
AAAVTPPVVV GNLSQPSKEQ LQASSEVSTK GTQTKHISNL SLRTRTKVQM QGVAVGRAVD  600
LTTLEGYEDL IDELENVFEI KGELREMNKW SVVFTDDEND MMLVGDDPWP EFCKMAKRIF  660
IYSSEEVKKM SRXXESKLVS PSSLDSLDSE RKTES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1731435313355Auxin response factor 1
4ldw_A1e-1731435313355Auxin response factor 1
4ldw_B1e-1731435313355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234110.0KU323411.1 UNVERIFIED: Trichosanthes dioica clone TdARF_9 auxin response factor 18-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139643.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0A0K8870.0A0A0A0K887_CUCSA; Auxin response factor
STRINGXP_004139643.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9