PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | B3 | ||||||||
Protein Properties | Length: 712aa MW: 79734.9 Da PI: 5.1879 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.8 | 1.3e-20 | 567 | 660 | 2 | 92 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ +++++ Cla014974 567 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCGKY 660 79*************************999999********7778*********777777777777.*******************9..44477765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-28 | 560 | 661 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 9.75E-35 | 564 | 660 | No hit | No description |
SuperFamily | SSF101936 | 5.1E-23 | 565 | 660 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.475 | 566 | 679 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-19 | 566 | 667 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-17 | 567 | 660 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MNDLVEFHSE DLHAGFVNEQ QEEIMDQTQI WLHDQNQQQQ NHQNFLSDND DDTLMFYSDF 60 PPLPDFPCMS SSSSSSSTPA PVKATASSSS SSSSSSVTSW AVLKSDADEI TEEIRTNYDA 120 NKLSSPPVAE TAFTGGGDCT DDMMMETFGY MDLLEDSNEF FDPTCIFQNE QEQQQEQRVV 180 VEEDQEGLED LQLERFEEVE MEDLMMMHGG ESKDNDDDNG GKQNDVVEEE DMAKVFLEWL 240 RSNRETVSAD DLRNVRIKKA TIESAARRLG GGKEGMKQLL KLVLQWVQTN HLHKRKFKDL 300 TVETDTHFLG FQNNPNSSSN LPWIQTPPPL PPPPLYSSPM LGYVPATGGD AYGVGRGFSD 360 HYGQLLYSSL SWSNNSSSNN NNNFSGQFGL PPSHFNSFVD NFAAGPPLPP PPPPPPPPPR 420 RNHKGGSGGA GGDNGLVRLD SSATKEARKK RMARQRRFSA HHRHHHGGHH GNSHQDQHPT 480 QMNPNASDHC NMATTTQPNA GNWVYWPSPS AAVASSATSS GFPVDSQPVQ AVDRPNSSMQ 540 NQNYPPRIPS DRRLGWKPEK NLKFLLQKVL KQSDVGNLGR IVLPKKEAET HLPELEARDG 600 ISIAMEDIGT SRVWNMRYRY WPNNKSRMYL LENTGDFVRA NGLQEGDFIV IYSDVKCGKY 660 VNDSRSESTA TRVETREQKA RKIAKKPYDY GCQCVVTFAN DHRNTEETLK KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-38 | 562 | 677 | 1 | 116 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-38 | 562 | 677 | 1 | 116 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681802 | 0.0 | LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458109.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 | ||||
Swissprot | Q01593 | 1e-143 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A0A0K8A1 | 0.0 | A0A0A0K8A1_CUCSA; Uncharacterized protein | ||||
STRING | XP_008458109.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9448 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-113 | B3 family protein |