PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014905
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 491aa    MW: 54368.4 Da    PI: 6.5689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014905genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09304351455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cla014905 304 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 351
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.15E-9298355No hitNo description
SuperFamilySSF474591.57E-16298365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16300365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6304351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MENEFFLNST GISQSLMHFD SNPSIAAWHH QFSSAMDVPP QPQLPELNHS SSHQSPPDCF  60
LNPVPDHSFQ FDSALSSMVS SPAASNSNLT NESFVIRELI GKLGGNSERR ILELNSTAAL  120
TPSSSSVAEF SSDPGFAERA ARFSCFGSRS FNGRQLTNEF GNYRSHLSIA NEKLSRVSSS  180
PSLKALGSET NLQEHKNNSS SQEDESSLSN PDKTISNPRK RKATTKPKLK EPVDEAAPEK  240
GSPKKLKAVE TKENEKGNVK TEEDLRKTDE NLAEEKQTKA NSKPPEAPKD YIHVRARRGQ  300
ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL QHQVEFLSMK  360
LASVNTTRVD FNMDSLISKQ MYQSGTSLTH PQISPIDSSA SSFYGHQNSS LPTTSHCSVD  420
PLDSVLCQNL PIQLPPLNSF LQNPSQYPNF GEDELQSIVQ MGFVQNQTQE MSLQSHNFNL  480
GNLAVSQFQL R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818020.0LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150900.20.0PREDICTED: transcription factor bHLH62 isoform X1
TrEMBLA0A0A0K8F40.0A0A0A0K8F4_CUCSA; Uncharacterized protein
STRINGXP_004170614.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-92bHLH family protein