PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014628
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 340aa    MW: 38338.9 Da    PI: 7.7707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014628genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.12.3e-3027130199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrsefelvv 94 
                f+kv tpsdv+k++rlv+pk++ae++     +++e++  l +ed+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L++gD+v F+  l++  + ++++
  Cla014628  27 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQrpLHH-AKDRFFI 125
                89****************************66667899*************************************************55333.4555699 PP

                EEE-S CS
         B3  95 kvfrk 99 
                 ++r+
  Cla014628 126 DWRRR 130
                99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3922131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2924129IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-2425114No hitNo description
SMARTSM010197.8E-2027131IPR003340B3 DNA binding domain
PfamPF023621.1E-2727130IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36727131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEECGNNNND NNNNNNCCVF VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDASSN  60
EKGLLLNFED RCGKLWRFRY SYWTSSQSYV MTKGWSRFVK DKRLDAGDIV SFQRPLHHAK  120
DRFFIDWRRR PPHPTVDMPF PFNRGGQFPP HHHFQLHGQW NNNPVATPLS LHRDHVLHLP  180
HNNNVSLFHN TYNHHHHNHN RHPVLDGSSY GGASAFYHLR SPSTAPQIGA VPVVADGKGG  240
GSSGGGGKTA AAKTTLRLFG VNMECAVSEE SGDDECDIGT TSTTTMLSSS QFHVYNGMPM  300
PMPMLMPMSM QMPINNNNVS TMEFFEKGKS SMSSSFDFDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-61211312114B3 domain-containing transcription factor NGA1
5os9_B6e-61211312114B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237247KGGGSSGGGGK
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-132LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-132LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653180.11e-158PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011653181.11e-158PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_011653182.11e-158PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827996e-67NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0A0KZM61e-156A0A0A0KZM6_CUCSA; Uncharacterized protein
STRINGXP_008452034.11e-151(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-62B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]