PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | DBB | ||||||||
Protein Properties | Length: 197aa MW: 21894.9 Da PI: 6.7182 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC++C ++ H Cla014604 4 LCDACESAAAIVFCAADEAALCRSCDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 27.5 | 6.6e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Cla014604 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHK 92 5799**************************99966666787 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.296 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.6E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.93E-6 | 3 | 45 | No hit | No description |
SuperFamily | SSF57845 | 7.1E-5 | 48 | 88 | No hit | No description |
PROSITE profile | PS50119 | 9.186 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.1E-11 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-6 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MRTLCDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HKRYLLLRQR VEFPGDKPIN LDDPSPHSKV 120 PNEIGKVHNQ PPPHKVTVED NQQNHHRLSP VQEANDDGHA ETDTKMIDLN MKPQRVHGQA 180 ANNQVQMLFL ISSFNSV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 1e-126 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 1e-126 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146516.1 | 1e-133 | PREDICTED: B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 1e-74 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0A0KUM1 | 1e-131 | A0A0A0KUM1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160959.1 | 1e-132 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-77 | DBB family protein |