PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014540
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 533aa    MW: 59464.2 Da    PI: 6.5927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014540genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.76.4e-881715323374
       GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                e ++++A+ ++s+d++la+ +L rl+++  ++++ +p++R+a++f eAL++ l+  +++  + l++++    + +++++a+k+fs +sPi+ fsh+t+Nq
  Cla014540 171 EDIVAAADSFDSNDFQLAHVILDRLNQRlqSASSTNPLHRAAFFFIEALQSLLSP-SPNRHNRLSSWP----DIVHTIKAYKAFSVISPIPMFSHFTTNQ 265
                56899**********************986666669******************9.444444455444....58************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                a+lea++ ++ +HiiDfdi+ G+Q++++++++ +++e+    pp lRiT+++++e   + e + ++e+L +fA+ l+++f+++++  +++++l++++ ++
  Cla014540 266 ALLEALNASSIIHIIDFDIGFGGQYASFMKEIVDKAESrnvvPPVLRITAIVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFQTLSFKSVKF 363
                ********************************9877444455***********66..8889999********************9999************ PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 +gE+ a+ l   ++  l   +s++s   ++L  v+++sP vvv+v+ e  +d +++sF + ++++le+y+ +++sl+a  ++  e+ + +E ++++++i
  Cla014540 364 MEGEKAAILLTPTIFCRL---GSINS-VASFLADVRRVSPCVVVFVDGEgwSDSGATSFKRNLVDSLEFYALMLESLDAA-GASCEWVRRIETFVVRPKI 458
                ************999999...56666.667*******************77788999********************998.67779************** PP

       GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +v  +g++       +  Wre ++ aG+kpv+ls++a  qa++ll k++++g+++ +++++lvl+W++rpLv++SaWr
  Cla014540 459 LAAVEGAGRM------AAPPWREVFHGAGMKPVALSQFADFQAECLLGKIQVRGFQIGKRHAELVLCWHERPLVATSAWR 532
                ****999998......799************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.917143512IPR005202Transcription factor GRAS
PfamPF035142.2E-85171532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MRVPVSNQQS SLPSSTPKLH SSPSTIAFQT PTPTPTPPRS PSPVAHDNPL SSAEDPHNNN  60
PSVEWDEHTL HNLDWDSIMG DLGLHDDSNS ALKNNNITTT TTTTNHNHHH HHHHHPLPHF  120
PDFLHSQSFD QSSHLLPPDF FLSEPFSNHS PTMLQSFNSF NSNNPSLDFL EDIVAAADSF  180
DSNDFQLAHV ILDRLNQRLQ SASSTNPLHR AAFFFIEALQ SLLSPSPNRH NRLSSWPDIV  240
HTIKAYKAFS VISPIPMFSH FTTNQALLEA LNASSIIHII DFDIGFGGQY ASFMKEIVDK  300
AESRNVVPPV LRITAIVPEE FAIESRLIRE NLCQFAQDLK IRFHIDLVPL RTFQTLSFKS  360
VKFMEGEKAA ILLTPTIFCR LGSINSVASF LADVRRVSPC VVVFVDGEGW SDSGATSFKR  420
NLVDSLEFYA LMLESLDAAG ASCEWVRRIE TFVVRPKILA AVEGAGRMAA PPWREVFHGA  480
GMKPVALSQF ADFQAECLLG KIQVRGFQIG KRHAELVLCW HERPLVATSA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2217753126377Protein SCARECROW
5b3h_D2e-2217753126377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453725.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-149SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3BWY30.0A0A1S3BWY3_CUCME; scarecrow-like protein 15
STRINGXP_008453725.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-125GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]