PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 455aa    MW: 51210.3 Da    PI: 6.9419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014537genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.19.7e-88934543374
       GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                e ++++A+ ++s+d++la+ +L rl+++  ++++ +p++R+a++f eAL++ l+  +++  + l++++    + +++++a+k+fs +sPi+ fsh+t+Nq
  Cla014537  93 EDIVAAADSFDSNDFQLAHVILDRLNQRlqSASSTNPLHRAAFFFIEALQSLLSP-SPNRHNRLSSWP----DIVHTIKAYKTFSVISPIPMFSHFTTNQ 187
                56899**********************986666669******************9.444444455444....58************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                a+lea++ ++ +Hi+Dfdi+ G+Q++++++++a+++e+    pp lRiT+v+++e   + e + ++e+L +fA+ l+++f+++++  +++++l++++ ++
  Cla014537 188 ALLEALNASSFIHIVDFDIGFGGQYASFMKEIADKAESknmvPPVLRITAVVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFQTLSFKSVKF 285
                *********************************9995556679**********65..8889999********************9999************ PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 +gE+ a+ l   ++r l   +s++  + ++L  ++++sP vvv+v+ e   d +++sF + +++ le+y+++++sl+a  +   e+ + +E ++l+++i
  Cla014537 286 MEGEKAAILLTPTIFRRL---GSVNI-IASFLADIRRVSPCVVVFVDGEgwPDSGAASFKRNLVKNLEFYATMLESLDAA-GVGGEWVRRIETFVLRPKI 380
                *****************9...44444.558*******************55577999********************877.6788999************ PP

       GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   v  + +        ++ Wre ++ aG++pv+ls++a  qa++ll kv+++g++v ++ ++lvl+W++rpLv++SaWr
  Cla014537 381 FATVEGARE------MAVAPWREVFHGAGMRPVALSQFADFQAECLLGKVQVRGFQVGKRYAELVLCWHERPLVATSAWR 454
                999865554......4899************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.21865434IPR005202Transcription factor GRAS
PfamPF035143.4E-8593454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGDLGLHDDS NSALKNNNIT TTTTTTNHNH HHHHHHHPLP HFPDFLHSQS FDQSSHLLPP  60
DFFLSEPFSN HSPTMLQSFN SFNSNNPSLD FLEDIVAAAD SFDSNDFQLA HVILDRLNQR  120
LQSASSTNPL HRAAFFFIEA LQSLLSPSPN RHNRLSSWPD IVHTIKAYKT FSVISPIPMF  180
SHFTTNQALL EALNASSFIH IVDFDIGFGG QYASFMKEIA DKAESKNMVP PVLRITAVVP  240
EEFAIESRLI RENLCQFAQD LKIRFHIDLV PLRTFQTLSF KSVKFMEGEK AAILLTPTIF  300
RRLGSVNIIA SFLADIRRVS PCVVVFVDGE GWPDSGAASF KRNLVKNLEF YATMLESLDA  360
AGVGGEWVRR IETFVLRPKI FATVEGAREM AVAPWREVFH GAGMRPVALS QFADFQAECL  420
LGKVQVRGFQ VGKRYAELVL CWHERPLVAT SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2412045430375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453725.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-145SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3BWY30.0A0A1S3BWY3_CUCME; scarecrow-like protein 15
STRINGXP_008453725.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]