PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014465

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 718aa MW: 78732.2 Da PI: 6.0037

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014465	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5.2e-20	47	102	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++e+e++F+++++p+ ++r eL+++lgL+ qVk+WFqN+R+++k Cla014465 47 KKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMK 102 577789***********************************************998 PP
2	START	176.7	1.4e-55	235	456	2	206
HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 la + ++el ++a+ +ep+Wv +n+ e+l++f + + +++ea+r+s++v+m++++lv +++d qW++ + +a+t+e +s Cla014465 235 LAVSGMEELRRMAQGGEPLWVAGDgkssseVVLNEAEYLSSFGGGIGgkpmgFRTEASRVSAIVFMNHMKLVDIFMDAT-QWSTVFCgivsRASTVEILS 333 5677799***********976655556778899999999955554****************************.**99999***** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +g gal++m+ae+q++splvp R+ +fvRy++q+++g w+++dvS+d ++ ++ ++pSg+li++++ng+sk+twvehv++++ ++ Cla014465 334 PGlpgnfnGALHVMSAEFQVPSPLVPtRENYFVRYCKQQSDGLWAVADVSLDTLRPSL-IPNTR---RRPSGCLIQELPNGYSKITWVEHVEVDETGVPT 429 **************************************************9976.35555...5**************************** PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 ++r+lv+sgla+gak+wva+l+rq e+ Cla014465 430 MYRPLVNSGLAFGAKRWVAALDRQSER 456 *********************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.38E-19	36	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-21	41	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	44	104	IPR001356	Homeobox domain
SMART	SM00389	1.5E-19	45	108	IPR001356	Homeobox domain
CDD	cd00086	6.26E-19	46	105	No hit	No description
Pfam	PF00046	1.2E-17	47	102	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	79	102	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.054	225	459	IPR002913	START domain
SuperFamily	SSF55961	8.93E-30	228	457	No hit	No description
CDD	cd08875	5.26E-110	229	455	No hit	No description
SMART	SM00234	6.2E-51	234	456	IPR002913	START domain
Pfam	PF01852	7.2E-47	236	456	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	6.6E-5	341	453	IPR023393	START-like domain
SuperFamily	SSF55961	1.04E-21	478	710	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MFDPDMFDTH HHMLEELENM RDDDFETKSG AEILEPACGT DQQRSKKKRY NRHTQHQIQE 60 MEAFFKECPH PDDKQRMELS RELGLEPLQV KFWFQNKRTQ MKAQHERHEN AILKAENEKL 120 LAENIRYREA FAHSTCPNCG SSSTALGEMS FDDQHLRIEN SRLRDEIERM SGYGSKCTKP 180 YYQLPTNAPT RSLELGITNF GAQSSGFVGE MYGAADFLRS ISRASEGEKP VIVELAVSGM 240 EELRRMAQGG EPLWVAGDGK SSSEVVLNEA EYLSSFGGGI GGKPMGFRTE ASRVSAIVFM 300 NHMKLVDIFM DATQWSTVFC GIVSRASTVE ILSPGLPGNF NGALHVMSAE FQVPSPLVPT 360 RENYFVRYCK QQSDGLWAVA DVSLDTLRPS LIPNTRRRPS GCLIQELPNG YSKITWVEHV 420 EVDETGVPTM YRPLVNSGLA FGAKRWVAAL DRQSERFATS IATTIPTGDL RVISSIEGRK 480 SMLKLAERMV TSFCAGVGAS SVHAWTALPA AAGDEVRVVT RKSTDEPGRP PGVVLSAATS 540 FWIPVPPKVV FDFLRKEKSR SEWDILSNGG LVQEMAHIAN GRHSGNCVSL LRVNSANSSQ 600 SNMLILQESC TDSTGSYVIY APVDTVAMNV VLSGCDPDYV ALLPSGFAIL PDGPGGGGNN 660 GDGILELGSG GSLITVAFQI LVDSVPTARL SIGSVATVNS LIKCTVERIR AAVMRENP

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MFDPDMFDTH HHMLEELENM RDDDFETKSG AEILEPACGT DQQRSKKKRY NRHTQHQIQE  60
MEAFFKECPH PDDKQRMELS RELGLEPLQV KFWFQNKRTQ MKAQHERHEN AILKAENEKL  120
LAENIRYREA FAHSTCPNCG SSSTALGEMS FDDQHLRIEN SRLRDEIERM SGYGSKCTKP  180
YYQLPTNAPT RSLELGITNF GAQSSGFVGE MYGAADFLRS ISRASEGEKP VIVELAVSGM  240
EELRRMAQGG EPLWVAGDGK SSSEVVLNEA EYLSSFGGGI GGKPMGFRTE ASRVSAIVFM  300
NHMKLVDIFM DATQWSTVFC GIVSRASTVE ILSPGLPGNF NGALHVMSAE FQVPSPLVPT  360
RENYFVRYCK QQSDGLWAVA DVSLDTLRPS LIPNTRRRPS GCLIQELPNG YSKITWVEHV  420
EVDETGVPTM YRPLVNSGLA FGAKRWVAAL DRQSERFATS IATTIPTGDL RVISSIEGRK  480
SMLKLAERMV TSFCAGVGAS SVHAWTALPA AAGDEVRVVT RKSTDEPGRP PGVVLSAATS  540
FWIPVPPKVV FDFLRKEKSR SEWDILSNGG LVQEMAHIAN GRHSGNCVSL LRVNSANSSQ  600
SNMLILQESC TDSTGSYVIY APVDTVAMNV VLSGCDPDYV ALLPSGFAIL PDGPGGGGNN  660
GDGILELGSG GSLITVAFQI LVDSVPTARL SIGSVATVNS LIKCTVERIR AAVMRENP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-156	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-156	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134971.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Refseq	XP_011658159.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A0A0KN23	0.0	A0A0A0KN23_CUCSA; Uncharacterized protein
STRING	XP_004134971.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24703	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]