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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Nin-like | ||||||||
Protein Properties | Length: 202aa MW: 23221.8 Da PI: 10.2952 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.6 | 3.8e-26 | 79 | 128 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + i+l+dl+k+F pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiks+ Cla014353 79 AGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSI 128 679*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.882 | 63 | 148 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-21 | 81 | 128 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MKNAHLSCFS KGELCELKNG KFHQPKNLPL LDQDLNFLPC CSVAISKGSE NQMKESCEPG 60 GKLPVIAEKK RRATSEHIAG ITLSDLAKNF GVPITEASRN LNVGLTVLKR KCREFGIHRW 120 PHRKIKSIDG LIRDLQEEAK HREEDHKALM AVTKRQMMLQ NERESIERTP FRELEIETKR 180 FRQDVFRRKH KARALESQSP SV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-101 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-101 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899254.1 | 1e-128 | PREDICTED: protein RKD5 | ||||
TrEMBL | A0A1S4DTD9 | 1e-127 | A0A1S4DTD9_CUCME; protein RKD5 | ||||
STRING | XP_008440912.1 | 1e-129 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9646 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-46 | RWP-RK domain-containing protein |