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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cla014258 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family |
SRS |
| Protein Properties |
Length: 333aa MW: 36015.4 Da PI: 7.3601 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla014258 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 237 | 2.8e-73 | 110 | 264 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaeskke 99
g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerq++laa++s++ ++ ++++kr+r+ + +++s+l++t ++++++++
Cla014258 110 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLhlhGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSG 209
5789*****************************************************9999998877778899999999********************* PP
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
le+ ++P+e++s+avfrcvrvss dd ++++aYqtav+igGhvfkGiLydqG+e+
Cla014258 210 LEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPEN 264
*****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MSGFFTLGGG GGGGGGGREE HQENQQNNRP NEIIPPDSSL FWYKGNVEVW QQQQQQHHHH 60
HHHHHHHQEQ ALFQTQSRTT PYSAPLGVRS SDESSSRSGN FMMISSGSGG GGISCQDCGN 120
QAKKDCSHMR CRTCCKSRGF HCETHVKSTW VPAAKRRERQ DKLAALQSHH PHQLHLHGDN 180
NPKRHRDYNP TSSSSLACTL IPTNNNTSGL EIGNFPAELN SPAVFRCVRV SSTDDTDDQY 240
AYQTAVNIGG HVFKGILYDQ GPENNYIPPA ETSSGGGGSS SGVQPLNFIA GAADATASGG 300
STAALPLMDP SSLYSTPLNS FMAGTQFFPP PRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 9e-65 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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