PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014246
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 342aa    MW: 37575.1 Da    PI: 8.4413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014246genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000172462831254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ ++++ L++l+ +      +K + +++L++A+ YI+ L
  Cla014246 246 RKEKLGDRISALQRLVAPF-----GKTDTSSVLTEAIGYIQFL 283
                7778899*********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10244296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-5244288No hitNo description
Gene3DG3DSA:4.10.280.108.8E-8248292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESANLQHQL QELFVGYSSL VSAPRTAPIT HECNPNIILD GNSYNNPYLV DQSLQCSSRE  60
NDQNVWFNFS STYQQQPNEQ QLSTLYSSVQ SPASYGGFQG ISAGSNTNYY TNNVFSSSSR  120
NNNSNSSSST STLDLLSSSS FSSSMGYNLQ AADHHHLDFL STPNYSSGFS KNRALFGYGA  180
HQHHHVQDSI NNNNSPSNSS NKTSSSSVAR AKRPVNSMSE PKKSNNPESK KSCSTSRSSC  240
PPLKVRKEKL GDRISALQRL VAPFGKTDTS SVLTEAIGYI QFLHDQVETL SMPYLGSSQS  300
KPYQKQQPAS IPEDGTKPRQ DLRSRGLCLM PLSYASFIHG FD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-115LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-115LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150000.11e-170PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBLA0A0A0KGK31e-168A0A0A0KGK3_CUCSA; Uncharacterized protein
STRINGXP_004170476.11e-169(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.17e-30bHLH family protein