PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014196

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 511aa MW: 53902.6 Da PI: 8.389

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014196	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cla014196 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	11.2	0.0012	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Cla014196 132 WKCDKCSKKYAVQSDWKAHSKIC 154 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.94E-7	55	78	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	56	78	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.2E-5	56	78	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	97	127	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.6E-4	120	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.94E-7	127	152	No hit	No description
SMART	SM00355	150	132	152	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MPTDVKDSSI ASGEASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKSL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP EPSCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR DSFITHRAFC 180 DALAEESAKS QPKPVDSQPK PDLDANPDGD SQSAAVKPNP EPSPPPLPSS PPAPSPPQST 240 GEVTTVLPIP SQELSENPSQ CIEEALGTPG LSGSSSSSKS ASSNSSARTS GFAGLFTSSS 300 MSTGIQPPRP PAFTDLMQGM ACTDRSSDYV PSSTIEPISL CLAMNQGSSI FGTASQDLRQ 360 YTPTPPPAMS ATALLQKAAQ MGAAASNASL LRGLGLVSSS PLAAQQESLP WNHHHQRQVE 420 PDGLSIAAGL GLGLPCDGNS GLKELMRGNH SMFAPKHTTL DFLGLGMAAG GSPNSGLAAL 480 ITSVGSGVDV GITTRSYGGG DISGDDMNRS N

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MPTDVKDSSI ASGEASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKSL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP EPSCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR DSFITHRAFC  180
DALAEESAKS QPKPVDSQPK PDLDANPDGD SQSAAVKPNP EPSPPPLPSS PPAPSPPQST  240
GEVTTVLPIP SQELSENPSQ CIEEALGTPG LSGSSSSSKS ASSNSSARTS GFAGLFTSSS  300
MSTGIQPPRP PAFTDLMQGM ACTDRSSDYV PSSTIEPISL CLAMNQGSSI FGTASQDLRQ  360
YTPTPPPAMS ATALLQKAAQ MGAAASNASL LRGLGLVSSS PLAAQQESLP WNHHHQRQVE  420
PDGLSIAAGL GLGLPCDGNS GLKELMRGNH SMFAPKHTTL DFLGLGMAAG GSPNSGLAAL  480
ITSVGSGVDV GITTRSYGGG DISGDDMNRS N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	128	189	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-35	128	189	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-135	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-135	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022950662.1	0.0	protein indeterminate-domain 2-like isoform X1
Swissprot	Q9LVQ7	1e-179	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1S3B2B0	0.0	A0A1S3B2B0_CUCME; protein indeterminate-domain 2-like
STRING	XP_008440687.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-115	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]