PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014073

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 322aa MW: 35159.5 Da PI: 5.4266

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014073	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	145	191	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka+iL A+ YIk+Lq Cla014073 145 DHVIAERKRREKLSQRFVALSALIPDL-----KKMDKASILADAITYIKDLQ 191 6999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.408	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-12	145	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-17	145	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.29E-15	146	195	No hit	No description
SuperFamily	SSF47459	1.7E-16	146	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-14	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50846	9.296	250	322	IPR006121	Heavy metal-associated domain, HMA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030001	Biological Process	metal ion transport
GO:0046872	Molecular Function	metal ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDDLEMNPFD CTLEDLSNFQ AFSDESYTSH VDLENSVQTP AAPPAKQART TGSSRKIASM 60 AASSSSSHII SFGNSHSSCN PKLEMGCELS GNIVDLSSVV AQPCNDNNNN NNTPNYYYSP 120 RNHGVGIKRS AAAINNNRSP LLAQDHVIAE RKRREKLSQR FVALSALIPD LKKMDKASIL 180 ADAITYIKDL QERLKVANEQ AAKGTMESVV FVNRSDDVST IVVGDDSSEE NSSSSDGAIP 240 DIEARVSGKD VLLRIHGKKC KGCLSNILNQ IEKLNLTVLN SSALPFGNFR LDITIIAQMD 300 DDFSMTVKEL VQKLRQASLE FV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	ERKRRE
2	150	155	RKRREK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-130	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-130	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440467.1	1e-167	PREDICTED: transcription factor bHLH18-like
Refseq	XP_016899206.1	1e-167	PREDICTED: transcription factor bHLH18-like
Swissprot	Q1PF16	8e-53	BH019_ARATH; Transcription factor bHLH19
TrEMBL	A0A1S4DT89	1e-165	A0A1S4DT89_CUCME; transcription factor bHLH18-like
STRING	XP_008440467.1	1e-166	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF455	34	164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	1e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]