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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | AP2 | ||||||||
Protein Properties | Length: 599aa MW: 65917.1 Da PI: 7.9421 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2.1e-11 | 292 | 345 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkk 52 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k Cla014051 292 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALK 345 78*******************87776664446655.77**************987 PP | |||||||
2 | AP2 | 32.6 | 2e-10 | 372 | 415 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cla014051 372 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 415 566889****988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-8 | 292 | 345 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-9 | 292 | 348 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.68E-13 | 292 | 345 | No hit | No description |
SMART | SM00380 | 5.8E-7 | 293 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.617 | 293 | 345 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-7 | 293 | 345 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 294 | 305 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.49E-23 | 355 | 425 | No hit | No description |
SMART | SM00380 | 1.4E-28 | 356 | 429 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.912 | 356 | 423 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-5 | 372 | 415 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-14 | 372 | 424 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-14 | 373 | 423 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 405 | 425 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MNNVNGNNCN WLGFSVSPNV NMELSSSSAT TVSPSIPANL FHSSSQFNYG ICYGVDAEHG 60 GFYSPLSAMP LKSDGSICSM EALSRQHPQV VSSSTPKLED FFGGATMGSH HYESNDREAM 120 ALSLDSIFCH QNPTHEPNNQ TFAHFSSLRS RELMLQDSKV ILPDGCNLQQ QQQHHPAVAQ 180 SDISSMKNWA VPRNYAATNN GSFEQKMVNC MTENSGESGP INAMAYGDLQ SLSLSMTMSP 240 SSQSSCVTTT QHVSPAMADC SAMDTKKRGH EKVDQKQIVH RKSLDTFGQR TSQYRGVTRH 300 RWTGRYEAHL WDNSCKKEGQ SRKGRQGGYD MEEKAARAYD LAALKRSSGF SRGASIYRGV 360 TRSNKSQFKA LHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGMNAVT 420 NFDITRYDVE RIIASNTLLS GDLAKRKQQP EFDNESLRRS PTHNSNSEAM PLPSQNSSQS 480 ESDWKMALYQ SSQQLVPKQR MLSAINDDGS QIGVEDSARM GAHFSNASSM VTSCSLSSSR 540 EESPDKTSLS MVFGMPQSTS KPFAASASNM NTSWIASAQQ LRAANCMSQL PVFAAWTDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657909.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q38914 | 1e-132 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1S3B152 | 0.0 | A0A1S3B152_CUCME; AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
STRING | XP_008440434.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-91 | AP2 family protein |