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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla014034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 32453.2 Da PI: 9.8568 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.1 | 3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Cla014034 5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDPEfssilHQRSNVDLKDKWRN 55 79***********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.743 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.51E-15 | 2 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.99E-18 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 4.35E-6 | 116 | 154 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.0E-7 | 120 | 154 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.5E-5 | 123 | 154 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI LHQRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNSMALR QHDNPMPVST VLPNEEIVDA KPLAISNGTI RSNGPKEPLA 120 RLDKLISEAI NNLKEPRGSD RAAIAMYIEV KHKYRIAPNS PSSGRRNTPL LLLEDKDKQM 180 DSSKTKKSEV KIITKSQVDS ELSKMKVMTA EEAAIAAARA VAEAEAAIAE AERAAREAEE 240 AEAEAETAQV FAEAAMKALE CRTFPSRSPI QKVLLQDVND SPSTSLPLVI KWLAY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-165 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-165 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657906.1 | 1e-155 | PREDICTED: telomere repeat-binding factor 2 isoform X3 | ||||
Swissprot | Q9FJW5 | 8e-64 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A1S3B118 | 1e-152 | A0A1S3B118_CUCME; telomere repeat-binding factor 2 isoform X3 | ||||
STRING | XP_004141859.1 | 1e-147 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 6e-61 | MYB_related family protein |
Publications ? help Back to Top | |||
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