PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 295aa    MW: 32453.2 Da    PI: 9.8568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014034genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
        Cla014034  5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDPEfssilHQRSNVDLKDKWRN 55
                     79***********************************99***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.743161IPR017930Myb domain
SuperFamilySSF466893.51E-15265IPR009057Homeodomain-like
SMARTSM007176.8E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-13456IPR009057Homeodomain-like
PfamPF002491.5E-7555IPR001005SANT/Myb domain
CDDcd116604.99E-18657No hitNo description
SuperFamilySSF467854.35E-6116154IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.0E-7120154IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.5E-5123154IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI LHQRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNSMALR QHDNPMPVST VLPNEEIVDA KPLAISNGTI RSNGPKEPLA  120
RLDKLISEAI NNLKEPRGSD RAAIAMYIEV KHKYRIAPNS PSSGRRNTPL LLLEDKDKQM  180
DSSKTKKSEV KIITKSQVDS ELSKMKVMTA EEAAIAAARA VAEAEAAIAE AERAAREAEE  240
AEAEAETAQV FAEAAMKALE CRTFPSRSPI QKVLLQDVND SPSTSLPLVI KWLAY
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-165LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-165LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657906.11e-155PREDICTED: telomere repeat-binding factor 2 isoform X3
SwissprotQ9FJW58e-64TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A1S3B1181e-152A0A1S3B118_CUCME; telomere repeat-binding factor 2 isoform X3
STRINGXP_004141859.11e-147(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.26e-61MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. KotliƄski M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]