PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014015
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 235aa    MW: 25946.2 Da    PI: 7.6999
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014015genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.11.8e-302103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q++++++
  Cla014015   2 SCNGCRVLRKGCSESCILRPCLqwidtAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTV 101
                6*********************9999777889***************************************************************99987 PP

     DUF260  96 ll 97 
                l+
  Cla014015 102 LR 103
                75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7311107IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTAE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLRGGTLRPI NDFLAAGSPN  120
LASDDTSEAE VGCTDMWKIR DSYPNSRFSN SRSRLSPKRK RSEESSPKHQ LNDLDLRLTP  180
TFPAKSTLRA ATPSMNSEES ETTTCFESGL GDNHHQHQYY PEEGTTQRKL LNLFV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-173LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-173LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141875.11e-168PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN232e-87LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0A0KJN91e-166A0A0A0KJN9_CUCSA; LOB domain-containing protein
STRINGXP_004166571.11e-167(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-78LOB domain-containing protein 37