![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla013967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 297aa MW: 32337.7 Da PI: 10.1275 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 226 | 283 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Cla013967 226 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTMLVVTYEGEHNHT 283 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.7E-18 | 175 | 222 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-33 | 212 | 283 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.031 | 219 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-27 | 221 | 283 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-37 | 224 | 284 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-27 | 226 | 282 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MAVEIKSHPY PLLTMEANAV QEAASGLESV EKLIRLLSNA NAPQPHSLPS STQSPIDFPT 60 DCRAAADVAV SKFKKVISLL GRSRLGHARF RRAPLPQQPH YATPIQQIPP HPHLDNNHNN 120 NNDSVNFSAH NSFISSLTGD ADTKHPSSSS SPFLITNLSQ VSSVGKPPLS TSSLKRKCSS 180 DNLGSGKCAA ASSSARCHCS KKRKLRVKRV VRVPAISLKM ADIPPDDYSW RKYGQKPIKG 240 SPHPRGYYKC SSVRGCPARK HVERAVDDPT MLVVTYEGEH NHTLSLPETS SLILESS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 222 | 284 | 15 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 222 | 284 | 15 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00275 | DAP | Transfer from AT2G23320 | Download |
![]() |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT582746 | 0.0 | KT582746.1 Benincasa hispida var. chieh-qua cultivar A39FA WRKY transcription factor 45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440311.1 | 0.0 | PREDICTED: probable WRKY transcription factor 15 | ||||
Refseq | XP_008440312.1 | 0.0 | PREDICTED: probable WRKY transcription factor 15 | ||||
Refseq | XP_008440313.1 | 0.0 | PREDICTED: probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 4e-92 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A120MFJ9 | 0.0 | A0A120MFJ9_BENHI; WRKY transcription factor 45 | ||||
STRING | XP_008440311.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23320.1 | 2e-73 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|