PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013871
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 295aa    MW: 34267.9 Da    PI: 9.7907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013871genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-182368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
        Cla013871 23 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 68
                     899*****************************.***********996 PP
2Myb_DNA-binding57.14.2e-1875118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
        Cla013871  75 RKPFSEEEEERLLGAHRIHGNK-WSLIARLFP-GRTDNAVKNHWHV 118
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6441873IPR017930Myb domain
SuperFamilySSF466897.49E-3021116IPR009057Homeodomain-like
SMARTSM007178.4E-152271IPR001005SANT/Myb domain
PfamPF002492.9E-172368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-272476IPR009057Homeodomain-like
CDDcd001671.07E-132667No hitNo description
PROSITE profilePS5129421.03774124IPR017930Myb domain
SMARTSM007174.9E-1474122IPR001005SANT/Myb domain
PfamPF002494.1E-1575117IPR001005SANT/Myb domain
CDDcd001674.08E-1177117No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2077123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKDSADNLHL NYHDHQYKSS CPRGHWRPAE DEKLRQLVEQ YGAQNWNSIA EKLQGRSGKS  60
CRLRWFNQLD PRIIRKPFSE EEEERLLGAH RIHGNKWSLI ARLFPGRTDN AVKNHWHVIM  120
ARKQREQSKL CGNKRTYQQF SATSSSSNFL NQTTTQSSST NHPQFTTTIL LSDNNNNNSH  180
KDGMVWNFRQ GSFKGYSDNI LYSTSHYNNN NYYYYPNSSS SARFRFPNNK IPFGVFEFGS  240
QLCPSTTTLK KFMANTDHNN RHHLHAQESQ VQEQESPKDK DIPFIDFLGV GISSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30231237107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818151e-117LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132571e-117LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441565.11e-138PREDICTED: transcription factor MYB75-like isoform X1
TrEMBLA0A1S3B4D61e-137A0A1S3B4D6_CUCME; transcription factor MYB75-like isoform X1
STRINGXP_008441565.11e-138(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-65myb domain protein 52