PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla013819

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 450aa MW: 51538.5 Da PI: 6.7694

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013819	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.4	4.6e-24	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a++++++++ ++ +kk++W+ +sk+++erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d + Cla013819 120 KWTDKMVKLLITAVSYIGDDIASDLdgggrrkcqiiQKKGKWKLISKVIAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGtSCQVVENPALLDVI 216 7************888888875334455667899*******************************************9569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.0E-21	118	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MEGNLSQGGL IPGGTSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF 60 SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEEPSFTEDG IDGHNENSKG KKGSMWHRVK 120 WTDKMVKLLI TAVSYIGDDI ASDLDGGGRR KCQIIQKKGK WKLISKVIAE RGYQVSPQQC 180 EDKFNDLNKR YKRLNDIIGR GTSCQVVENP ALLDVIDYLT DKEKDDVRKI LNSKQLFYEE 240 MCSYHNSNRL HLPHDPALQR SLQLAFRARE DHDNDEPRRH QNDDFDENEN GETDEHDDFE 300 ENFVPHVDNR RSLGVLGGSV KRLKRGQDHE DAAHACGNSL SPLDCNKSFH AHSQAQFGQA 360 DIAHLETESI KASTSQKQWM ELRLLQLEEQ KLQIQVEMLE LEKQKFKWDR FNKKKDRELE 420 KMRMVNERMK LENERIALDL KQKQIGPGFH

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MEGNLSQGGL IPGGTSYGGL DLQGPFKVHN QGQHSHALHQ QHHPHTRQGS SANPSIQEGF  60
SLSMGVVQNC DHTMSLVEYN KGERCKNSAS DEEPSFTEDG IDGHNENSKG KKGSMWHRVK  120
WTDKMVKLLI TAVSYIGDDI ASDLDGGGRR KCQIIQKKGK WKLISKVIAE RGYQVSPQQC  180
EDKFNDLNKR YKRLNDIIGR GTSCQVVENP ALLDVIDYLT DKEKDDVRKI LNSKQLFYEE  240
MCSYHNSNRL HLPHDPALQR SLQLAFRARE DHDNDEPRRH QNDDFDENEN GETDEHDDFE  300
ENFVPHVDNR RSLGVLGGSV KRLKRGQDHE DAAHACGNSL SPLDCNKSFH AHSQAQFGQA  360
DIAHLETESI KASTSQKQWM ELRLLQLEEQ KLQIQVEMLE LEKQKFKWDR FNKKKDRELE  420
KMRMVNERMK LENERIALDL KQKQIGPGFH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441519.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
TrEMBL	A0A1S3B4A7	0.0	A0A1S3B4A7_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103485620
STRING	XP_004160309.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-151	sequence-specific DNA binding transcription factors