PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013813
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 236aa    MW: 25927 Da    PI: 4.8239
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013813genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-13176221348
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L  e
  Cla013813 176 AEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENERLLRE 221
                568**************************************99755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-9174232IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.645176221IPR004827Basic-leucine zipper domain
PfamPF001701.4E-11176221IPR004827Basic-leucine zipper domain
CDDcd147071.11E-15178205No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-12179221No hitNo description
SuperFamilySSF579592.88E-10179225No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTVDGLLRNG YNSNPTESSI LLDAQITLVD SPNPSSLPMN TTTTTTTNSS AVIDSNHNSS  60
SGAPPPKTVD DVWREIVSGE RKELKEEVAD EMITLEDFLL KSGAVPVEDV KLPQTERLSG  120
GVFSFDPIPS TTFQALDKVE GSIIGFANGV DLIGSGGSGG RGKRGRAALE PLDKAAEQRQ  180
RRMIKNRESA ARSRERKQAY QVELESLAVR LEEENERLLR EKVFLFSFDI HMRTSF
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140964.11e-129PREDICTED: G-box-binding factor 4
SwissprotP427772e-45GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A0A0KBB41e-128A0A0A0KBB4_CUCSA; Uncharacterized protein
STRINGXP_004140964.11e-129(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.18e-46bZIP family protein