PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013766
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 687aa    MW: 76063.9 Da    PI: 7.1787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013766genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22118219199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++        ++    +t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD+++F   + +++ l+
  Cla013766 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVEP--PVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFL--RAENGDLC 213
                89****************************974333..3459************************************************..4488889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  Cla013766 214 IGVRRA 219
                ***996 PP
2Auxin_resp1011.6e-33278360283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a  a+++++FevvY+P a+++eFvvk++ +++a+++++   mRfkmafeted+s++++ +Gt+++++ +dp+rWp+S+Wr+L+
   Cla013766 278 AVLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWfMGTISAIQVADPMRWPDSPWRMLQ 360
                 667899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-30106221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-36110221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-20117218No hitNo description
PfamPF023622.1E-20118219IPR003340B3 DNA binding domain
SMARTSM010199.0E-21118220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788118220IPR003340B3 DNA binding domain
PfamPF065071.4E-28277360IPR010525Auxin response factor
PROSITE profilePS5174515.132599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDSVIDPMMN HDEHLDSQLW HACAGGLIQL PAINSKVVYF PQGHAEHAQG YVDFGNARIP  60
SLIPCRVSGI RHMADPETDE VFAKIKLTPT RTKEFSLDND DKLLGHNEIR SQEKPTSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VEPPVQTILA KDVHGEIWKF RHIYRGTPRR  180
HLLTTGWSNF VNQKKLVAGD SIIFLRAENG DLCIGVRRAK RGIGCGVDYS PSWNSTNSGP  240
PPVGFSDFMR ENEGRLVGRD SNGNLSGRLK VESVIEAAVL AASGKPFEVV YYPCAGAPEF  300
VVKASCLRSA MQIHWYSAMR FKMAFETEDA SRISWFMGTI SAIQVADPMR WPDSPWRMLQ  360
VTWDEPELLR NVQSVNPWLV EVVVNMPAIN VSPFSPPRKK PRLPIPAETS VFDHLPMPSF  420
STNIFDTTNP LLSITANKIP AGIQGARHTQ FGLSSPKLQI SKPLPGQFPP GFKHLDDATL  480
LPGIRGDDIF GDMKNPDNCS HWLTMGNHIQ SSKESSKESK ETKPTHIILF GQLIFPNQQN  540
SNSCSGDTTN ASDANQEKAS NLSDGSGLSS QQNGSLENSS EGGSTSYNGQ DKTGLGLDTG  600
HCKVFTELEN VGRTLDLSAL RSYEELYRKL GNMLSLRSSE MLNSVLYQDA LGSTKHVGEE  660
PFSEFLKKAR KLTILTDSRS RDNIRRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-741538151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234130.0KU323413.1 UNVERIFIED: Trichosanthes dioica clone TdARF_11 auxin response factor 18-like mRNA, partial sequence.
GenBankKU3234260.0KU323426.1 UNVERIFIED: Trichosanthes dioica clone TdARF_34 auxin response factor 18-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456485.10.0PREDICTED: auxin response factor 16-like
RefseqXP_008456486.10.0PREDICTED: auxin response factor 16-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3C4190.0A0A1S3C419_CUCME; Auxin response factor
STRINGXP_008456485.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2468333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]