PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013612

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 381aa MW: 40240.1 Da PI: 6.6478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013612	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	193	238	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cla013612 193 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 238 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.06E-16	186	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.10E-13	186	242	No hit	No description
PROSITE profile	PS50888	17.39	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-16	190	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	193	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MRLTNSLPDL HSHRHNHPTE TEASQRHHHQ LQTSLFHPSS FSSDDFLDQI LSAAPPPWEL 60 PAGLPNPHSD LPPQPLPSSN PDNVAFQIGD TTPAAKMAMA LLQQQLLMSR GITAADDSGL 120 LPMPGNDVVE IEGSSSFKCP NPGNSNSQKQ NFGAPVSVSS PSPAGPNSGV GAAPPAQPRQ 180 RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ 240 VKVLSVSRLG GATAAMPSLQ PDLSTEGGTE CNQSNGTGGA GGQASAEAPS SNDAMTVTEH 300 QVVKLMEEDM GSAMQYLQGK GLCLMPISLA TAISAATCHS RPTTTSKVRG DAPTSPSLSA 360 LTVQSTTLGN GTVDRTVSRP P

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MRLTNSLPDL HSHRHNHPTE TEASQRHHHQ LQTSLFHPSS FSSDDFLDQI LSAAPPPWEL  60
PAGLPNPHSD LPPQPLPSSN PDNVAFQIGD TTPAAKMAMA LLQQQLLMSR GITAADDSGL  120
LPMPGNDVVE IEGSSSFKCP NPGNSNSQKQ NFGAPVSVSS PSPAGPNSGV GAAPPAQPRQ  180
RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI IDYVKFLQLQ  240
VKVLSVSRLG GATAAMPSLQ PDLSTEGGTE CNQSNGTGGA GGQASAEAPS SNDAMTVTEH  300
QVVKLMEEDM GSAMQYLQGK GLCLMPISLA TAISAATCHS RPTTTSKVRG DAPTSPSLSA  360
LTVQSTTLGN GTVDRTVSRP P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN688727	1e-101	LN688727.1 Cucumis melo genomic scaffold, unassembled_sequence36141.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022946667.1	0.0	transcription factor bHLH69-like
Swissprot	Q9ZUG9	6e-86	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0A0LFE4	0.0	A0A0A0LFE4_CUCSA; Uncharacterized protein
STRING	XP_004139396.1	0.0	(Cucumis sativus)
STRING	XP_004168602.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-65	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]