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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla013555 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 154aa MW: 17907.4 Da PI: 8.7581 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 30.9 | 4.9e-10 | 1 | 47 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+E++RR++++s +++L +llP+ + l+ + +A++YIksL+
Cla013555 1 MEKNRRNKMKSLYSKLNSLLPThH--SNELPLTVSNQIDEATKYIKSLE 47
6*********************66..46667****************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF00010 | 9.5E-7 | 1 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 11.865 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.44E-9 | 1 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.7E-8 | 1 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.39E-5 | 1 | 51 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0050832 | Biological Process | defense response to fungus | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 154 aa Download sequence Send to blast |
MEKNRRNKMK SLYSKLNSLL PTHHSNELPL TVSNQIDEAT KYIKSLEIKL KNDEEKKERF 60 LRRSKMSSLS LSSSLSYSTP SMSQNRNAPK LKIKDLGSTV EVVLTTGLDD RSIFYEIIDI 120 FHEERAEIIN ISYSTLENTV IYSLHTEVYI REDF |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016900532.1 | 2e-55 | PREDICTED: transcription factor bHLH36-like isoform X1 | ||||
| TrEMBL | A0A1S4DX24 | 5e-54 | A0A1S4DX24_CUCME; transcription factor bHLH36-like isoform X1 | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF906 | 34 | 98 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 2e-25 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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