PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013461
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 336aa    MW: 38321.4 Da    PI: 5.1654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013461genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++ +G ++W++ ++  g+ R++k+c++rw +yl
        Cla013461 16 RGPWSPAEDLRLITFIQNHGHDNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding52.88.8e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e +++++k +G++ W++Ia++++ gRt++++k+ w+++l
        Cla013461  69 RGNFTQDEEEMIIKLHKTWGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23766IPR009057Homeodomain-like
PROSITE profilePS5129413.6871163IPR017930Myb domain
SuperFamilySSF466891.03E-2814110IPR009057Homeodomain-like
SMARTSM007179.4E-121565IPR001005SANT/Myb domain
PfamPF002491.9E-141663IPR001005SANT/Myb domain
CDDcd001675.27E-81863No hitNo description
PROSITE profilePS5129425.43264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2667118IPR009057Homeodomain-like
SMARTSM007171.5E-1568116IPR001005SANT/Myb domain
PfamPF002492.5E-1569114IPR001005SANT/Myb domain
CDDcd001671.62E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGKGRAPCCD KNQVKRGPWS PAEDLRLITF IQNHGHDNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTQDEEEMI IKLHKTWGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLLP  120
TTKVVSNNSS DEPKESSSTT SSSSFSSSSS LLSSNQDQNL ETEQLNKTNS INNNSNNLFC  180
PKPQTTSSIS TNTSNSNSSW PQNHFDFGDQ EVEKKKENKQ MELELELESQ SNTMGIEIPL  240
ECDKDFWNML DLDIDLFESN EVDQNYCQGS NFGAQKNQEF ENHKWFKYLE NELGLNRPPE  300
PDGRGGADDT TAAERLLVDD VDPCMAYFAD GFTQQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-25161184105C-Myb DNA-Binding Domain
1msf_C7e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456304.10.0PREDICTED: myb-related protein Myb4
SwissprotQ6R0A61e-79MYB63_ARATH; Transcription factor MYB63
TrEMBLA0A1S3C3L50.0A0A1S3C3L5_CUCME; myb-related protein Myb4
STRINGXP_008456304.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.12e-72myb domain protein 72
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]