PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013345
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 316aa    MW: 35478.7 Da    PI: 9.9122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013345genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-15135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        Cla013345 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.1612580IPR017884SANT domain
SMARTSM007171.3E-82678IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-102883IPR009057Homeodomain-like
PfamPF002492.2E-52974IPR001005SANT/Myb domain
CDDcd001671.69E-62975No hitNo description
PROSITE profilePS5129420.955128184IPR017930Myb domain
SuperFamilySSF466895.76E-17130183IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-18131183IPR006447Myb domain, plants
SMARTSM007172.7E-13132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-13132179IPR009057Homeodomain-like
CDDcd001672.02E-11135180No hitNo description
PfamPF002495.7E-13135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKWEMEILSP PSSLVSTMSW SSGDGKSSRW TVAENKMFEN ALAIFDTDTP DRWQKVASMI  60
PGKTVGDVIR QYKELEADVS SIEAGLIPIP GYDTSQFTLD WVSSHSYDGF KQSYGFVGKR  120
SSGRSADQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVVTRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLNDTRSPS PENKKSVSPE HSTVLPRHSN PSSTVARTTF  240
NWNHHHQQQH NTNGAAMVFN HSNGNVFMSP SAFSVNSYAG LRLPEHHLQK GAVNEPFIGP  300
QNMIFQMQAG HCFPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-152195276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819191e-166LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132651e-166LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022944113.10.0transcription factor DIVARICATA isoform X1
SwissprotQ8S9H71e-127DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A0KC640.0A0A0A0KC64_CUCSA; Uncharacterized protein
STRINGXP_004168809.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-102Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]