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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla013223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | B3 | ||||||||
Protein Properties | Length: 135aa MW: 15395.2 Da PI: 9.0017 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.1 | 2.4e-11 | 56 | 107 | 43 | 93 |
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 ++W++ + y +++++ + k Wk+Fv++ngLk gD +vF+l + + +++ Cla013223 56 EKVWKIDY-YGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLeCSsTLLKFR 107 489*****.65555567788*********************762333333444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-12 | 20 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.82E-13 | 21 | 112 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-12 | 22 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.7E-9 | 56 | 102 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.911 | 57 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEPPQNGEIL PLLGKLYHPF ILSKSHAPPI YNICLPTKFH SVLPALMIPT AILCGEKVWK 60 IDYYGNRRSK ALDPKQWKKF VNDNGLKCGD ACVFELLECS STLLKFRVQI LRGHIPFQLH 120 HKFSGETKDI PIIID |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681854 | 2e-82 | LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042. | |||
GenBank | LN713260 | 2e-82 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022974195.1 | 3e-67 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_022974196.1 | 3e-67 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_022974197.1 | 3e-67 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_022975683.1 | 3e-67 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_022975684.1 | 3e-67 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_022975685.1 | 3e-67 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A0A0L3V3 | 2e-64 | A0A0A0L3V3_CUCSA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-07 | B3 family protein |