PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013120
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 272aa    MW: 29699.2 Da    PI: 4.9948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013120genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037114136123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F ++  L  H++ H
  Cla013120 114 FSCNYCQRKFFSSQALGGHQNAH 136
                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-6112141No hitNo description
PROSITE profilePS5015711.344114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKPFLDLEKE PSCLANDSDI SSQVASSNYI SPLHENSNDN SLITNSSFLA NPNLAAAQPG  60
FESVCLDLTL NFNIEDLETR PDSTGFSLSS TSDQSSNEPT ACYNTATMAV PRVFSCNYCQ  120
RKFFSSQALG GHQNAHKRER TLAKRAMRMG ILAERYASLA SLPLKGSSFK SLGIKAHSSL  180
LHGITAPMKP TDIRSSARFE PEPGYIGMPI FLEDDEAEVM WPGSFRPMVE TRNPQELTRP  240
SFVLTGISSI SSAEKTSSED AENSTPDLTL KL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140816.10.0PREDICTED: zinc finger protein 4-like
TrEMBLA0A0A0LBR91e-180A0A0A0LBR9_CUCSA; Uncharacterized protein
STRINGXP_004140816.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-36zinc finger protein 7