![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla013107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 23202.1 Da PI: 6.6055 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F ++ L H++ H Cla013107 69 FSCNFCKRVFYSSQALGGHQNAH 91 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-4 | 56 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.49E-7 | 66 | 96 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MIFQGEQIES LKENKGQDES NEEEEEEEEE EARDQPDGVG ALEWLNLSLG RNKQLLTESQ 60 RSAASTKTFS CNFCKRVFYS SQALGGHQNA HKRERSAARR HQAHKMMTLL GLPIHNSMVR 120 SLGVQPHSLV HKPGREDTAV VARFNHVKTG SWAPFMLRDA VDFMWPGSFR FAQHQILPEP 180 PPPPPPPQQE PPMESFKLDL NLRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 1e-170 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 1e-170 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022922826.1 | 1e-114 | zinc finger protein 4-like | ||||
TrEMBL | A0A1S3C410 | 1e-111 | A0A1S3C410_CUCME; zinc finger protein 7-like | ||||
STRING | XP_008456235.1 | 1e-111 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2529 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24625.1 | 1e-23 | zinc finger protein 7 |