PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012819
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 713aa    MW: 80115.3 Da    PI: 7.4992
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012819genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.7e-20129245198
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..................EEETTEEEE-TTHHHHHHHHT--TT CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy................rkksgryvltkGWkeFvkangLkeg 77 
                f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+                + +++r++lt+GW+ Fv +++L +g
  Cla012819 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGFEWRFKHIFrgeppsrysdynrmfmNSQPRRHLLTTGWSTFVTSKRLVAG 226
                99****************************9643..445569****************9********99999999999999******************* PP

                -EEEEEE-SSSEE..EEEEE- CS
         B3  78 DfvvFkldgrsefelvvkvfr 98 
                D++vF   + +++el+v+v+r
  Cla012819 227 DSFVFL--RGENGELRVGVRR 245
                ******..449999*****98 PP
2Auxin_resp106.62.9e-35271349182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 a+ha+st++ F v+Y+Pra  s+F+v+++k+ +a++ k+svGmRfkm+fe+e+s+err+sGt+vgv d++p +W+nS WrsL
   Cla012819 271 ASHAVSTQTRFVVYYKPRA--SQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSP-HWTNSDWRSL 349
                 789***************8..9*************************************************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.32E-38116274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38123260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-17127245No hitNo description
PfamPF023621.9E-17129245IPR003340B3 DNA binding domain
SMARTSM010194.7E-16129247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941129247IPR003340B3 DNA binding domain
PfamPF065071.9E-32271349IPR010525Auxin response factor
PfamPF023091.8E-11590685IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-11596678No hitNo description
PROSITE profilePS5174523.455602683IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MANRGGGSFL PSSIPPQGWA GDELYAELWR VSAGPLVEIP RVNEKVLYFP QGHMEQLEAS  60
TNQELNQKLP LFNLSSKILC QVVDTRLLAE QDSDEVYAQI TLMPEANQEL PTSLEPSPPE  120
CRKPKVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AKDLHGFEWR  180
FKHIFRGEPP SRYSDYNRMF MNSQPRRHLL TTGWSTFVTS KRLVAGDSFV FLRGENGELR  240
VGVRRLARQQ SSMPSSVISS HSMHLGVLAT ASHAVSTQTR FVVYYKPRAS QFIVSLNKYI  300
EAMNYKFSVG MRFKMRFEGE ESPERRFSGT IVGVDDMSPH WTNSDWRSLR IQWDELASIQ  360
RPDRVSPWEI EPFVAPTSPS IPHSISIKNK RPRPPLEILD SDNSTVTTLR HPGSSQSHDD  420
RTQLSVAAAE IKRFENHATR HYKQTDVSSN GNSVSRSPME GSWLTSPNGS VSQHRLQELT  480
DDRKSSSVWS TVFPGVLASN STCPTPRPSN PKSDQVHDLG EKGRKTEVAP SCRLFGIELI  540
NHSKSPVPPE RVPDQPISAP NEITDAEQNS NLPKASKERK LGLLQVPPKE IQHKQNSSTS  600
SRSRTKVQMQ GMAVGRAVDL TTLEGYGQLI DELEKMFDIK GELRPRNKWE IVFTDDEGDT  660
MLMGDYPWQE FCNMVRRIYI WSSQDVKMSS GSKLAMSTIE CDGTVITSES ADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-162123737355Auxin response factor 1
4ldw_A1e-162123737355Auxin response factor 1
4ldw_B1e-162123737355Auxin response factor 1
4ldx_A1e-162123737355Auxin response factor 1
4ldx_B1e-162123737355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389393KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234300.0KU323430.1 UNVERIFIED: Trichosanthes dioica clone TdARF_38 auxin response factor 9-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653224.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0A0KX410.0A0A0A0KX41_CUCSA; Auxin response factor
STRINGXP_008451925.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9