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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla012800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Nin-like | ||||||||
Protein Properties | Length: 963aa MW: 106031 Da PI: 5.1392 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.5 | 3.1e-29 | 588 | 639 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ Cla012800 588 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 639 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.824 | 578 | 659 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.1E-26 | 591 | 639 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.22E-22 | 856 | 947 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 7.3E-24 | 860 | 942 | No hit | No description |
PROSITE profile | PS51745 | 21.017 | 863 | 945 | IPR000270 | PB1 domain |
SMART | SM00666 | 8.7E-22 | 863 | 945 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.42E-30 | 864 | 944 | No hit | No description |
Pfam | PF00564 | 5.2E-17 | 866 | 944 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 963 aa Download sequence Send to blast |
MENPFTSKEE GMGSWGPSRT QAETLTSTDV GMRILSPEDV LHSFSELMSF DSYAGWGNNC 60 ATIDQIFSSC GFSSIPPMST CPSMVGLTFP EGASHEAFPL NELDGASISV ANSFSCGDKV 120 MFQQPDTEFG VSDVSDNANE AGSKSNDVLL DNCSISRPFS WSLDERMLRA LSLFKESSPG 180 GILAQVWVPV RHGNQFFLST SDQPYLLDQM LTGYREVSRS FTFSAEGKLG SLLGLPGRVF 240 TSKIPEWTSN VRYYSENEYL RMEHAIGHEV YGSIALPVFN NELEKSCCAV LEVVTTKEKP 300 DFDAEIDIVS RALEIVSLRT VAPPRLYPQC LKQNQRSALA EIMDVLRAVC HAHSLPLALT 360 WIPCCYTLEA VDEAARVRVK ENNLSPKEKS VLCIEETACY VNDKATQGFV HACMEHHLEE 420 GQGIAGKALQ SNHPFFYPDV KAYDINKYPL VHHARKFGLN AAVAIRLRST YTGDDDYILE 480 FFLPVSMKGS SEQQLLLNNL SGTMQRMCRS LRTVSKEELM GVRDPDAGFQ GGLIGKSAAT 540 SRRNSQSTVT DSETRVSNSI NDGTEAECPK KQMTNGSRRQ GEKKRSTAEK NVSLSVLQQY 600 FSGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLRKIQTVL DSVKGVEGGL 660 KFDPTTGGLM AAGSLIPELN GQNSLLFSDN NPSTRNLEPF LQDVNSVPPV PFNGQNSAMK 720 LEMEDSFITI SQRISSRSIL IPEEEPNVCQ LDCSEGSKST GVDAASCQLA EMDMMGWDVP 780 RNAECRRSGD ADCQFMAKSS CSFAAADEGI EGINEHYQPT TSSTADSSNG SGLLIHGSSS 840 SCQSVEERKH LPEKISSVDS DSKIIVKASY REDTVRFKFD PSLGYLQLYE EVGKRFKLNQ 900 GTFQLKYLDD EKEWVMLVSN SDLQECLEVM DEIGTRNVKF LVRDIVCAVG SSSSSSCFLS 960 RGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454098.1 | 0.0 | PREDICTED: protein NLP9 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A1S3BXT6 | 0.0 | A0A1S3BXT6_CUCME; protein NLP9 | ||||
STRING | XP_008454098.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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