PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cla012633

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 253aa MW: 28522.3 Da PI: 4.8615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012633	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.4	4e-06	194	236	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r+ R++i +++ L++l+P K++ a++L +A Y+k L Cla012633 194 IAARKQREKISEKIRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 236 667999**************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.32E-9	186	241	No hit	No description
PROSITE profile	PS50888	14.684	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-11	187	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-12	189	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-10	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDDLLWNGSW SKEEDSSCEE SVFVSDDPSQ LSSPPLQELQ TVARMLGLPE VDTPAPEMRR 60 VEKLVKDSKF LCERENSWPE GASTGEVLVE ELENDKGIAP QGGFLDIVEN QKPNQQNSII 120 EKQSSSANFT APSPSLLSSN NNEIQRPVDR DHVVSQMKEL IYYAAVFRPV NLGLETVEKK 180 MRRNTKMSKQ PQTIAARKQR EKISEKIRVL QRLVPGGSKM DTASMLDEAA SYLKFLRAQI 240 KALEGLSYTT WLY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146860.1	1e-124	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	1e-43	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A0A0LDH7	1e-123	A0A0A0LDH7_CUCSA; Uncharacterized protein
STRING	XP_004154878.1	1e-126	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]