PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012590
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 352aa    MW: 38832.8 Da    PI: 6.7808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012590genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv+++  +G g+W+++++  g+ R++k+c++rw +yl
        Cla012590 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding47.44.6e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E  l+v+++  lG++ W+ Ia+ ++ gRt++++k++w++
        Cla012590  67 RGSFSPQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.43961IPR017930Myb domain
SuperFamilySSF466893.63E-2911108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002495.9E-161461IPR001005SANT/Myb domain
CDDcd001673.57E-121761No hitNo description
PROSITE profilePS5129424.72262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2465117IPR009057Homeodomain-like
SMARTSM007177.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1367110IPR001005SANT/Myb domain
CDDcd001671.87E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKLISHE  120
VSALATFSSH LQNPNTSINN EGFFIINGNP NLILSTSAHQ DQPSFPTSTL QAGFDHLIDY  180
KLDQFTNLNP NGNLVHLLPS ISPSTNFFPH DPPMWQSSGG YHLQPLNSDQ SVVTSGEFVT  240
PTTALPQYVD SSFLHPTTMP KLCEVGEESL CSSIPQISAP LQDLDPVTKL SSFQNGYYPQ  300
DQSLVANQMA MEQIDMIMSS ILQNPPCSSL SSSSSLGLSG LSSDLVSLSW SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31141167108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141218.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A384R7V00.0A0A384R7V0_CITLA; MYB103-like protein
STRINGXP_004141218.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-80myb domain protein 26