PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011849
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 673aa    MW: 74013.5 Da    PI: 5.0975
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011849genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.75.2e-1353116721374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL arla  + +++k  ++ +  ++ns e l+++++ ++++P++kf+h+taNq
  Cla011849 311 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAA-TLTTAKPSSSIPPFPQNSFEILKIYQIVYQACPYVKFAHFTANQ 409
                68****************************************************9.44445555555555578*************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      ++++etg+ L+++A++l+vpfef++ + ++le+l++++++ + gE
  Cla011849 410 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGP----VIDAVRETGRCLTELAHSLNVPFEFHA-IGEQLEALKPNMFNRRVGE 504
                *************************************************....99*************************.7****************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                alaVn v +lhr++    sl +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vac
  Cla011849 505 ALAVNAVNRLHRVP--GKSLGN----LLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVAC 598
                *************9..455555....************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg er+erhe+l kWr+ +e+ GFk v+ls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
  Cla011849 599 EGPERIERHERLDKWRKLMEAKGFKGVALSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWR 672
                *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.814285652IPR005202Transcription factor GRAS
PfamPF035141.8E-132311672IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MINSLCGSIG SSKTTTGSSS ACTTKQHLPQ PTSPNESASA KTTPISSSDL EQTALTPPSL  60
NFPPPKFEID GDIEIQSPDN SVWESLFADQ LDCDFMISSP ARSLSSPQSL NFNYYNYNYG  120
QAMMQCSPPR SCSQVGASSS VQKGKGLSPL HKVFNSPSNQ YMQAIEGTSS LPTIGELLED  180
YQEDGFETYQ NMAKISGIGE SLQYYDISTS SLPPIVFEDL ALPNSSNLIC GSNQESSTVE  240
REFYNQIGSN ITTASLPQQQ QDDQDQQGNP PQLPPRLTPP LPKQAQSQLN HSLMAPLPVG  300
SEQEQDSGLQ LVHLLLACAE AVAKEDYMLA RRYLHHLNRV VTPIGDSMQR VASCFTEALT  360
ARLAATLTTA KPSSSIPPFP QNSFEILKIY QIVYQACPYV KFAHFTANQA IFEAFEAEER  420
VHVIDLDILQ GYQWPAFMQA LAARPGGSPF LRITGVGPVI DAVRETGRCL TELAHSLNVP  480
FEFHAIGEQL EALKPNMFNR RVGEALAVNA VNRLHRVPGK SLGNLLGMIR DQAPNIVTLV  540
EQEASHNGPY FLGRFLEALH YYSAIFDSLD ATFPPDSAQR AKVEQYIFAP EIRNIVACEG  600
PERIERHERL DKWRKLMEAK GFKGVALSSN AVTQSKILLG LYSCDGYRLT EDKGCLLLGW  660
QDRALIAASA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-9931867126378Protein SCARECROW
5b3h_A4e-9931867125377Protein SCARECROW
5b3h_D4e-9931867125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441631.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1S3B4L50.0A0A1S3B4L5_CUCME; DELLA protein RGL1-like
STRINGXP_008441631.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]