PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011845
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 746aa    MW: 84682.1 Da    PI: 7.3704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011845genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09154199146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++WTt Ed+ l+  ++q G ++W  Ia   g++Rt+ qc sr+q 
        Cla011845 154 RDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQR 199
                      789*****************************************96 PP
2Myb_DNA-binding37.94.1e-12242287147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T++Ed +l+ av ++G+++W++ a+ ++ gR   qc++rw++ 
        Cla011845 242 RGHFTPDEDSRLKIAVLLFGPKNWNKTAEFLP-GRNQVQCRERWFNC 287
                      899*****************************.***********996 PP
3Myb_DNA-binding49.78.7e-16294338147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eEd++l  a++++G   W+++a++++  Rt+++c+ rw k+
        Cla011845 294 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNDCRRRWKKL 338
                      568*****************99.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.56449148IPR017877Myb-like domain
SMARTSM007170.2253150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-85672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-8121161IPR009057Homeodomain-like
SuperFamilySSF466893.34E-5122166IPR009057Homeodomain-like
PROSITE profilePS5129412.094149205IPR017930Myb domain
SMARTSM007176.6E-5153203IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-14155231IPR009057Homeodomain-like
PfamPF139212.0E-8157218No hitNo description
Gene3DG3DSA:1.10.10.607.2E-13162212IPR009057Homeodomain-like
PROSITE profilePS500905.529202230IPR017877Myb-like domain
SMARTSM007172.4E-10206290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-4213232IPR009057Homeodomain-like
PROSITE profilePS5129414.442237288IPR017930Myb domain
SuperFamilySSF466891.22E-25239335IPR009057Homeodomain-like
PfamPF002499.4E-11242287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-18243294IPR009057Homeodomain-like
CDDcd001676.08E-8245286No hitNo description
PROSITE profilePS5129423.973289343IPR017930Myb domain
SMARTSM007173.6E-14293341IPR001005SANT/Myb domain
PfamPF002491.2E-14294338IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-17295338IPR009057Homeodomain-like
CDDcd001671.70E-11296339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MIDPRVQLIS AAKPQAKDSS KKDKRLSAMH YGPAENSHVA CYRMALMKFP RVDRKKWSVV  60
ERENLGKGIR QQFQEMVLQI SVDQISGLQG FSADSDDLDS ILASIKDLDI TPEKIREFLP  120
KVNWDKLASM YLRGRSGAEC EARWLNFEDP LINRDPWTTS EDKNLLFTIQ QKGLNNWIEI  180
AVSSGTNRTP FQCLSRYQRS LNASILKREW TKDEDDKLRA AVATFGLGDW WKKSLDPART  240
KRGHFTPDED SRLKIAVLLF GPKNWNKTAE FLPGRNQVQC RERWFNCLDP SLRRCEWTEE  300
EDLRLEIAIQ EHGYSWAKVA ACVPSRTDND CRRRWKKLFP NEVPLLQEAR KIQKAALISN  360
FVDRESERPA LGPTEFRPRP NTDLLCNSVD PRPAPKRNVK TSDAPKKRKS NCQRNQADVT  420
AQAGIANNTS SVPEEVKSLK PQRKQNRHGA YTAESIGVPE LCPNSEWCAK QSLDTQSLGV  480
QLNSKESEGT NSDCIETVDE NGMEVFENKV AEKLSERDVC FPEPEAIQNS TGSSGVSVLS  540
EMTNDMDEYN PSILPDTTLL ASITVDDLKE LKRKSVADRD LDDCNSFSLP CSDLELRTID  600
KEGVDSYSMD EFTDKSHEVC KPPHTRRKKN SKTSSKSQDH SFVSCQQVEL ERLGTNEPRH  660
HNQSKKRKHN STNTNLEAVE EVDDCTLVGF LQKRLKRTTT TNDKKVDCSS STPIEVDTDD  720
NDPTLASFLN KLKRKKHQPS SGGELN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-241523354151MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-241523354151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650583.10.0PREDICTED: uncharacterized protein LOC101216287
RefseqXP_011650584.10.0PREDICTED: uncharacterized protein LOC101216287
RefseqXP_011650585.10.0PREDICTED: uncharacterized protein LOC101216287
TrEMBLA0A0A0L2R20.0A0A0A0L2R2_CUCSA; Uncharacterized protein
STRINGXP_004134260.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-137myb domain protein 4r1