PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011357
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 673aa    MW: 75172.3 Da    PI: 5.6865
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011357genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23129230199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+kvlt sd++++g +++ +k+a+e+       + ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v
  Cla011357 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmTLATP-TQDLVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGDNGELRV 225
                99**************************999744433.458************************************************..3489999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  Cla011357 226 GVRRR 230
                ***97 PP
2Auxin_resp99.25.9e-33255333182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 a+ha++t++ F v+Y+Pr+   +F+++++k+++a+++++svGmRf m+fe+eds+err+sGt++g  d++p +WpnS WrsL
   Cla011357 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISP-HWPNSSWRSL 333
                 689***************6..89*********************************************999.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-37120258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-38123244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-19127229No hitNo description
PfamPF023621.6E-21129230IPR003340B3 DNA binding domain
SMARTSM010192.9E-22129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323129231IPR003340B3 DNA binding domain
PfamPF065078.3E-31255333IPR010525Auxin response factor
PfamPF023091.6E-12550640IPR033389AUX/IAA domain
SuperFamilySSF542774.91E-15557638No hitNo description
PROSITE profilePS5174527.657562643IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MTYNGGDSYR QSYVSAQGCG RDDMYMELWR ACAGPLVDVP RVDERVFYFP QGHMEQLEAS  60
TNLELNKRIP LFNLASKILC RVIHIEPLAD HESDEVYAQI TLMPESDQNE PKSMDPCPPE  120
PARPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TLATPTQDLV AKDLQGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GELRVGVRRR ARQQTSMPPS  240
VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNN FSVGMRFNMS  300
FEGEDSPERR FSGTIIGAAD ISPHWPNSSW RSLRVQWDEQ TSIMRPDRVS PWDIEPLTSS  360
AVTDGADLTK PGHWDSGLAQ PHDGKQCSNA AESRKGENNE LCHHRETDTI SNSSCVSRAQ  420
TDTWLSPTQS NSYKHPVHDM AQDYKTVPGV GWSFLLGTST SHLVKLSDDP QILDPTENGR  480
NGETVASCRL FGIDLNHLAA EKEPSQPSCV SCDTDGRIST LSVAQSDPKS DNLEVSIERK  540
SEPSQASLKE VQCNQSSSSN TRSRTKVHMH GMAVGRAVDL TILEGYDQLI DELEKMFDVR  600
GQLCARDKWE IVYTDDEGDM MLVGDDPWEE FCNMVRRIFI CSREQVKNMG SGSKQLTPLE  660
VEGALVIPDS PGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1621835913357Auxin response factor 1
4ldw_A1e-1621835913357Auxin response factor 1
4ldw_B1e-1621835913357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234160.0KU323416.1 UNVERIFIED: Trichosanthes dioica clone TdARF_14 auxin response factor 9-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654692.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0A0KKD50.0A0A0A0KKD5_CUCSA; Auxin response factor
STRINGXP_008437407.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9