PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010807
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 345aa    MW: 37848.2 Da    PI: 5.8509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010807genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.95e-053755220
               HHHHHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsaf 20
               r +h+e E+rRR++iN+++
  Cla010807 37 RSKHSETEQRRRSKINERI 55
               899**************98 PP
2HLH27.36.5e-09711041855
                HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                s+f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Cla010807  71 SRFQILRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 104
                68**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-1935125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.85535103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-1237107No hitNo description
SMARTSM003537.0E-441109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1071124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-671104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVKTSKSIQE RFEDDGNEEL GVKIEGKSGE SKASGHRSKH SETEQRRRSK INERILVTFS  60
RFCEILCSDG SRFQILRDLI PQNDQKRDKA SFLLEVIEYI QFLQEKLNMY EGSCQGWSSE  120
PSKLMPWKNY GAADSYVDHS QVVKRGSNHE STVVFSQAML TNAPNVMDAD LGPAAVLNAV  180
DHTPVSAAQG LPMSMRTQPI VFDPVGRSSL STESLDEPVS GSENISSKTQ TGLLQGRTCT  240
TTGFLNHAVS DQEDLTVESE LESISGAYSH GLLSTLTQAL QASGVDLSQT NISVKVDVGK  300
RANRAMSLSE DDKKQSLNNQ VMGQSIHGCF GEDSQQAHKK LRTGV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818701e-175LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132611e-175LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901796.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A1S4E0P20.0A0A1S4E0P2_CUCME; transcription factor BIM2 isoform X1
STRINGXP_004137144.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-57BES1-interacting Myc-like protein 2