PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla010705

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 304aa MW: 32641 Da PI: 10.5861

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010705	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.9e-14	62	107	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE+ ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky Cla010705 62 KPWSEEEHRTFLAGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 107 58*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.711	56	112	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-16	58	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-17	59	111	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.8E-12	60	107	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	60	110	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-12	62	107	IPR001005	SANT/Myb domain
CDD	cd00167	9.77E-10	63	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGNLNLHACN NVLDLNNVAA ASAVNYLAGD NAAASADDAG YLSDGLIHNK RRKAAHERKK 60 GKPWSEEEHR TFLAGLKKLG KGDWRGISKN FVTTRTPTQV ASHAQKYFLR KMNANDKKKR 120 RASLFDIPEN KNNVPQDCQA SGETSSQILL PKNNNSENQQ QVNNLPTQLI NRFPHLCLDT 180 PHFIPPPNGS AATAAVANLN GNPYVVGVSP NNVPMIPMVN LGRRGGGVMS PTRSPMAAHP 240 SGIPPSPRSS PSRPLLLHQL QPSALAAVAA SSFETDALEL KIGLPQSPQP KNLSSQTSGA 300 IRVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	120	KKKRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	1e-79	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	1e-79	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023553250.1	1e-166	probable transcription factor At5g61620
TrEMBL	A0A1S3BXC8	1e-142	A0A1S3BXC8_CUCME; transcription factor MYB1R1
STRING	XP_008453854.1	1e-142	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13874	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	9e-42	MYB_related family protein