PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010576
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 509aa    MW: 56377.4 Da    PI: 6.0286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010576genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12302348354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h   Er+RR ++N++++ L++l+P +     +K++ a+++  A++YI++L
  Cla010576 302 TKHFTTERQRRVQLNEKYNALKSLVPIP-----TKNDRASVVGDAINYIQEL 348
                689*************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-14300365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.20E-11300353No hitNo description
PfamPF000102.4E-9302348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-11302358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MYEQTGCSDP DSTLPDPSQN AFPHTIPHIS VALPSFPPPL IAAAAQETHP NFHDNNLNLS  60
MEDISYPHHH HHSSGADAME LQFQQAPAGG FDNSNINPDF GQEVTSDSNR MVCLDQSDWV  120
GTQIQEMGFN HHHHHQIQSQ DHHHHPHQQQ FSDSAMPTAY TQAPDLLNFL NMPAPARCPN  180
NSSISFSNHH TSPMGGFLGD LPAGDAGNSS STSLSIHYDP LFHLNLPPQP PLFRELFHSL  240
PHGYGIPAAS SRGRGGSLFP EGEIMETEGT AGVYEDGDGS GVLEFSRDMA DCVGKGRNGK  300
MTKHFTTERQ RRVQLNEKYN ALKSLVPIPT KNDRASVVGD AINYIQELLR EVKELKLLVE  360
KKRCSRERSK RHRTAEELEG GGAWDVESTN AKAGGVVGDG VEDQSYNLRS SWLQRKTKDT  420
EVDVRIVDDE VTIKLVQRKL NCLLLVSKLL DDLQLDLHHV AGGHIGDYYS FLFNTKIYEG  480
SSVYASAIAN KVMEAVDRQY NNTTTSNTY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818451e-166LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132591e-166LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023006449.10.0transcription factor bHLH91-like
RefseqXP_023006450.10.0transcription factor bHLH91-like
TrEMBLA0A0A0LI110.0A0A0A0LI11_CUCSA; Uncharacterized protein
STRINGXP_004139000.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-59bHLH family protein