PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010429

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 163aa MW: 18020.2 Da PI: 7.0838

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010429	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.9	2.1e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC +dC++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i++lq+q+ +l++el+++++ Cla010429 10 PCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISALQRQVIRLQKELDATNA 108 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.673	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MASSSFSNSP CAACKFLRRK CLADCIFAPY FPPEEPTKFA NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS ALQRQVIRLQ KELDATNADL VRYASGGARP 120 PSQFGRRAAT ASMTRHHSDL SFLSPLSSND HDDPYCHDKE EDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-63	3	116	4	117	LOB family transfactor Ramosa2.1
5ly0_B	1e-63	3	116	4	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681890	1e-157	LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBank	LN713263	1e-157	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008458802.1	1e-109	PREDICTED: LOB domain-containing protein 25
Refseq	XP_016902322.1	1e-109	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	3e-70	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S3C8P8	1e-108	A0A1S3C8P8_CUCME; LOB domain-containing protein 25
STRING	XP_008458801.1	1e-108	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-72	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]