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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cla010332 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
MYB |
| Protein Properties |
Length: 311aa MW: 34889.2 Da PI: 7.8278 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla010332 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl
Cla010332 14 KGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l
Cla010332 67 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MGRPPCCDKE GVKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60
LRPGIKRGNF TDQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKVRKVQ 120
VRSNYGDDGF SGTSKQGMAR GQWEKRLQTD IRMARQALWE ALTPQNSTPN FSEILKPSFG 180
CFSYSSTKQS QAQATAYASS TENIAKLLTG WMKNPPKTAD KSTPNGKCGG GGDGDQDFES 240
IFRYECFENG NCNSEMSQSV CNSDNNQAME DGMNCEGLPF SVLEKWLLEE TGGVQPRDCG 300
FNDIGILDEK I
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 6e-26 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 3e-25 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-25 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-25 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 7e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 7e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kaurilind E,Xu E,Brosché M
A genetic framework for H2O2 induced cell death in Arabidopsis thaliana.
BMC Genomics, 2015. 16: p. 837
[PMID:26493993] - Lee HG,Seo PJ
The Arabidopsis MIEL1 E3 ligase negatively regulates ABA signalling by promoting protein turnover of MYB96.
Nat Commun, 2016. 7: p. 12525
[PMID:27615387] - Serrano I, et al.
A non canonical subtilase attenuates the transcriptional activation of defence responses in Arabidopsis thaliana.
Elife, 2017.
[PMID:27685353] - Liao C,Zheng Y,Guo Y
MYB30 transcription factor regulates oxidative and heat stress responses through ANNEXIN-mediated cytosolic calcium signaling in Arabidopsis.
New Phytol., 2017. 216(1): p. 163-177
[PMID:28726305] - Lee HG,Kim J,Suh MC,Seo PJ
The MIEL1 E3 Ubiquitin Ligase Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Stems.
Plant Cell Physiol., 2017. 58(7): p. 1249-1259
[PMID:28838126] - Mabuchi K, et al.
MYB30 links ROS signaling, root cell elongation, and plant immune responses.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(20): p. E4710-E4719
[PMID:29712840] - Zheng Y,Chen Z,Ma L,Liao C
The Ubiquitin E3 Ligase RHA2b Promotes Degradation of MYB30 in Abscisic Acid Signaling.
Plant Physiol., 2018. 178(1): p. 428-440
[PMID:30030326]
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