PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010230
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 450aa    MW: 51065.8 Da    PI: 9.5973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010230genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043390412123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kCp+C k F++   L  H r+H
  Cla010230 390 HKCPICFKAFKSGQALGGHKRSH 412
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.36E-7536No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5735IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.3936IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PfamPF139120.0053931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.36797124IPR007087Zinc finger, C2H2
SMARTSM003554.297119IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.1E-698119No hitNo description
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139120.07899120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-6385412No hitNo description
PROSITE profilePS501579.494390412IPR007087Zinc finger, C2H2
SMARTSM003550.088390412IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-9390412IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MENSKENKFV CNFCHKSFTC GKSLGGHIRI HKNEKSSRVA EKQRERSLKF QVPTERRRSK  60
RDLESEVGNG NSGYGLRENP KITRRFADSG YSSRQEKFCR ECGQGFQSSE ALSWHLACHS  120
GNERENRRLQ YNYGITHQKR EFIEENQSDI PERVREAAMC LMMMSKAPRF SGLEGLNSAA  180
ESSDSKSSSR HFRESDTSAS YSNGGLEMRE VTGRINKLEV SEFDGENSDS DNFRKEICKK  240
VKLKLSVHRA LLDEEYKKPD FKFGVRVGRA SADILKNSMK TKKNDDQVHA SYKYELRKRL  300
KNGSYSPDLW EGSSKKMPSE NFRSHDRETY TRMSNGCEWT HQSGENSVNT TTNSISIPSR  360
ELIESSNGKN KGHQDTSGNE EKKLGPKRKH KCPICFKAFK SGQALGGHKR SHVVGSLEDA  420
SIVTRQESNG ITGLIDLNVP APMEEEESGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446424.10.0PREDICTED: uncharacterized protein LOC103489174
TrEMBLA0A1S3BFQ30.0A0A1S3BFQ3_CUCME; uncharacterized protein LOC103489174
STRINGXP_008446424.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-24C2H2-like zinc finger protein