PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010083
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 491aa    MW: 55405.6 Da    PI: 5.9138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010083genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-10308350855
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ErrRRd+i++++  Lr l+P+ +      K++ a+i   A++YI++L+
  Cla010083 308 TERRRRDKIRDRLYALRALVPNiS------KMDRASIIVDAINYIRELE 350
                6*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-1910157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-16299365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.574300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15307366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8308350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.1E-4421485No hitNo description
CDDcd048738.75E-5440484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRSFQGALEC LRALVETKLW DYCIVWKSRD DSSSRFIHWV GCCCSGGVSD AGGKEEAGET  60
IPATLCKDTR FRHFRRTNAC QALAQFPSSI SLNSGVHGDV SISNQPTWLT STEVSSTSTF  120
SHELTGTRVL IPVSGGIVEL FATKHMPREA EVIDYVMAHC NVSLEHEFET ESELNAGLNE  180
ERLHSSTKFY PINCPDPQPL LDFKSKLEIL PSVSQSSSFP SCGEGSSSGS KPSNEHQYFD  240
SYSSLVSRGL LNQPIHRSFE SKGPMHQEDL LEQQRDVASE YSKSLQKDEA KTGGKQGKEV  300
FKSKNLFTER RRRDKIRDRL YALRALVPNI SKMDRASIIV DAINYIRELE ENVKSLQNEL  360
IQLEHEDCQK NKHLKISPLE NKNDNTNCWP LVQDDQPMFI LGEERPMEVE VEVMQINERD  420
FLIKLLCKQK QGGVVSSIEA MDSLGLQVVD VNITTFGGMV LNIFHVEANE NDIQPKRLRD  480
SLIKLTSREI R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313ERRRRD
2309314RRRRDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818967e-76LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132647e-76LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023543399.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A0A0KQ910.0A0A0A0KQ91_CUCSA; Uncharacterized protein
STRINGXP_004167566.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-63bHLH family protein