PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009981

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 304aa MW: 34392.5 Da PI: 4.5232

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009981	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30	1.4e-09	27	103	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt l+L+++ +e + ++ + ++W+ v++++ + + r+++qC+ kw+ l ++ ik++e k +e+ s + Cla009981 27 WTAADCLVLVNVIAAVEADCLKALSSYQKWKIVAENCTSLDVARTSNQCRRKWDCLLIEHDVIKQWELKM-PEDDSYW 103 ******************************************************************9986.5555455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-7	26	99	No hit	No description
PROSITE profile	PS50090	6.841	27	83	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MKKENAGNRG PGVSGSRRTR SQIALDWTAA DCLVLVNVIA AVEADCLKAL SSYQKWKIVA 60 ENCTSLDVAR TSNQCRRKWD CLLIEHDVIK QWELKMPEDD SYWCLESGRR KELGLPGNFD 120 EELFKAIDNV ATMRANQSDT EPDSDPEAAV ENTDEIAEPG PKRQRRRSMS KSNQALEKTL 180 ECERTEALEK SLECKEVEDG EEEEEKPLVS SPEVEPRECY IKSNGSKLTD NIEPKEQMMA 240 KFLLENAEKV QAIVSENAEY ATSDKKNDKD QTNLVRHQGS KLIRCLGDIL NTINDRYGLL 300 EDCE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136441.1	0.0	PREDICTED: uncharacterized protein LOC101210084
Refseq	XP_011652540.1	0.0	PREDICTED: uncharacterized protein LOC101210084
TrEMBL	A0A0A0LDW0	0.0	A0A0A0LDW0_CUCSA; Uncharacterized protein
STRING	XP_004164105.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6732	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-61	sequence-specific DNA binding transcription factors