PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009965
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 399aa    MW: 43152.2 Da    PI: 5.8883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009965genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-10233281355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Cla009965 233 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 281
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.98E-11228285No hitNo description
SuperFamilySSF474599.95E-17228295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16231297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-7233281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGDLENDEMG FRNSNEGLMN CPSTMAMGSF YGSGWDPLVS LGQSENFGAA SSMVSSHGEF  60
SNSFPVVLEN HGGSGTAQQG VQYPTDLEMS TKLPCFGSGN YSDMFGSSFG LAGQILGGCS  120
SNYRNAQTSQ ENLPLSGEET AVGSPNGKIR KRALDSTFPF SPNKKSEVKL KKDVSGDSSS  180
TQEEKNAEME QNLGGNSRGK ATGKQTKEKS NNSAEAPKEN YIHVRARRGQ ATNSHSLAER  240
VRREKISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPDVNI  300
DIERILSKDI FHARGSNGTV LGFDPGLSAV SPVPPHRMFQ FQGTMSNMAT TSTQFPPLPQ  360
TMLESDIQSL LQMGFDSGSA LDNLGPNGIV LHNLLALHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-149LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-149LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452681.10.0PREDICTED: transcription factor bHLH74-like
TrEMBLA0A1S3BV770.0A0A1S3BV77_CUCME; transcription factor bHLH74-like
STRINGXP_008452681.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-83bHLH family protein